View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_9 (Length: 434)
Name: NF6873A_low_9
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 11 - 429
Target Start/End: Complemental strand, 41357549 - 41357123
Alignment:
| Q |
11 |
aaaatgggaaaagtaagcacagacacagaaaatgaatatgaaaggttagctcatgagctaaatcgccaatcccttcaaacaataataggttgtgaaaata |
110 |
Q |
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| T |
41357549 |
aaaatgggaaaagtaagcacagacacagaaaatgaatatgaaaggttagctcatgagctaaatcgccaatcccttcaaacaataataggttgtgaaaata |
41357450 |
T |
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| Q |
111 |
tctaaagatctctatagcatagcatgatgcttcatatgtcattcat--------catacgatgttaaataagcacatagctagaatgtaaacaattgaac |
202 |
Q |
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| T |
41357449 |
tctaaagatctctatagcatagcatgatgcttcatatgtcattcattcattcatcatatgatgttaaataagcacatagctagaatgtaaacaattgaac |
41357350 |
T |
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| Q |
203 |
aacgcaaactaacctctagaaatgtcaatgtggaacgaagagaattcacaaaaaacttagcctcggatagatccatgatcctgcgctcctgtaatcagat |
302 |
Q |
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| T |
41357349 |
aacgcaaactaacctctagaaatgtcaatgtggaacgaagagaattcacaaaaaacttagcctcggatagatccatgatcctgcgctcctgtaatcagat |
41357250 |
T |
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| Q |
303 |
aagcaagaatctccattagtttgaattaatattttcaatcacagatcacgaaaactagcagtaaattcaaactccactatgctataatgctataactccg |
402 |
Q |
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| T |
41357249 |
aaacaagaatctccattagtttgaattaatattttcaatcacagatcacgaaaactagcagtaaattcaaactccactatgctataatgctataactccg |
41357150 |
T |
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| Q |
403 |
ctgtaccgctatttgacgccactttgt |
429 |
Q |
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| T |
41357149 |
ctataccgctatttgacgccactttgt |
41357123 |
T |
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