View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6874A_high_1 (Length: 779)

Name: NF6874A_high_1
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6874A_high_1
NF6874A_high_1
[»] chr1 (8 HSPs)
chr1 (16-281)||(51052350-51052618)
chr1 (16-281)||(11909107-11909375)
chr1 (16-281)||(35540919-35541187)
chr1 (16-281)||(6050473-6050741)
chr1 (47-143)||(16917842-16917938)
chr1 (48-129)||(47623111-47623192)
chr1 (47-129)||(43388392-43388474)
chr1 (47-210)||(37191243-37191406)
[»] chr5 (22 HSPs)
chr5 (16-281)||(12825069-12825337)
chr5 (16-281)||(30732316-30732584)
chr5 (16-281)||(27117163-27117431)
chr5 (16-281)||(42513590-42513858)
chr5 (100-281)||(12820035-12820219)
chr5 (17-220)||(23238318-23238521)
chr5 (16-210)||(28535677-28535871)
chr5 (32-220)||(8227960-8228148)
chr5 (16-206)||(35983793-35983983)
chr5 (47-157)||(19255155-19255265)
chr5 (24-210)||(42928075-42928261)
chr5 (16-153)||(31641513-31641649)
chr5 (156-281)||(3418653-3418781)
chr5 (47-143)||(25857457-25857553)
chr5 (47-133)||(27767063-27767149)
chr5 (48-129)||(10776789-10776870)
chr5 (47-143)||(8300215-8300311)
chr5 (47-129)||(33385407-33385489)
chr5 (47-183)||(18359125-18359260)
chr5 (37-153)||(33169659-33169775)
chr5 (49-157)||(27795480-27795588)
chr5 (24-129)||(26072917-26073022)
[»] chr2 (9 HSPs)
chr2 (16-281)||(4552039-4552307)
chr2 (47-157)||(41207013-41207123)
chr2 (47-153)||(15917655-15917761)
chr2 (49-195)||(28252679-28252825)
chr2 (47-133)||(12645557-12645643)
chr2 (47-153)||(17764995-17765101)
chr2 (49-168)||(14439738-14439857)
chr2 (47-150)||(40176672-40176775)
chr2 (47-156)||(38604407-38604516)
[»] chr3 (19 HSPs)
chr3 (16-281)||(2364147-2364415)
chr3 (16-281)||(19920231-19920499)
chr3 (16-281)||(7312647-7312914)
chr3 (16-281)||(10323573-10323841)
chr3 (16-281)||(34332817-34333085)
chr3 (16-210)||(40930530-40930724)
chr3 (46-133)||(7032339-7032426)
chr3 (47-129)||(29523778-29523860)
chr3 (47-129)||(11203844-11203926)
chr3 (48-129)||(33496572-33496653)
chr3 (47-129)||(12342259-12342340)
chr3 (47-153)||(26771022-26771128)
chr3 (60-143)||(7031063-7031146)
chr3 (47-168)||(35214404-35214525)
chr3 (47-129)||(36801108-36801190)
chr3 (37-146)||(963186-963295)
chr3 (37-153)||(2755843-2755959)
chr3 (47-171)||(19890661-19890785)
chr3 (60-150)||(16178952-16179042)
[»] scaffold0369 (1 HSPs)
scaffold0369 (16-281)||(11207-11475)
[»] scaffold0034 (1 HSPs)
scaffold0034 (16-281)||(105845-106113)
[»] chr8 (18 HSPs)
chr8 (16-281)||(7924256-7924524)
chr8 (16-281)||(8299673-8299941)
chr8 (16-281)||(171973-172241)
chr8 (16-281)||(13396258-13396526)
chr8 (26-220)||(32266498-32266692)
chr8 (16-281)||(41665371-41665639)
chr8 (16-210)||(9922545-9922739)
chr8 (47-143)||(20824307-20824403)
chr8 (47-210)||(13200067-13200230)
chr8 (186-281)||(20496954-20497052)
chr8 (47-129)||(17699507-17699589)
chr8 (47-168)||(2170328-2170449)
chr8 (47-129)||(37434157-37434239)
chr8 (62-147)||(34137011-34137096)
chr8 (82-220)||(2529820-2529958)
chr8 (49-157)||(13879522-13879630)
chr8 (62-129)||(43270475-43270542)
chr8 (47-157)||(25090384-25090494)
[»] chr7 (11 HSPs)
chr7 (16-281)||(4938130-4938398)
chr7 (16-220)||(11277254-11277458)
chr7 (16-220)||(47876917-47877121)
chr7 (16-220)||(29967909-29968113)
chr7 (130-281)||(31177421-31177575)
chr7 (16-189)||(235439-235614)
chr7 (16-211)||(37919487-37919682)
chr7 (16-220)||(17720569-17720773)
chr7 (47-210)||(25619403-25619566)
chr7 (47-129)||(18532653-18532735)
chr7 (47-169)||(37254743-37254865)
[»] chr4 (16 HSPs)
chr4 (16-281)||(23642593-23642861)
chr4 (16-281)||(13270893-13271161)
chr4 (16-273)||(47418682-47418942)
chr4 (16-281)||(47685897-47686165)
chr4 (16-220)||(15740155-15740359)
chr4 (16-220)||(1828542-1828746)
chr4 (16-220)||(19755198-19755405)
chr4 (16-220)||(19784401-19784608)
chr4 (16-210)||(7403857-7404051)
chr4 (165-281)||(159842-159961)
chr4 (47-150)||(55725719-55725822)
chr4 (47-129)||(12697838-12697920)
chr4 (47-129)||(45472742-45472824)
chr4 (49-147)||(11587233-11587331)
chr4 (47-128)||(8361126-8361207)
chr4 (47-129)||(20002750-20002832)
[»] chr6 (14 HSPs)
chr6 (39-281)||(12733995-12734240)
chr6 (16-220)||(2553571-2553775)
chr6 (16-210)||(18651236-18651430)
chr6 (16-211)||(24767426-24767621)
chr6 (16-133)||(21168220-21168337)
chr6 (47-143)||(17579114-17579210)
chr6 (47-143)||(17573688-17573784)
chr6 (47-129)||(17606367-17606449)
chr6 (47-133)||(21630140-21630226)
chr6 (49-186)||(14373026-14373163)
chr6 (47-129)||(10577282-10577364)
chr6 (62-147)||(15958861-15958946)
chr6 (47-196)||(20883066-20883215)
chr6 (37-146)||(13937708-13937817)
[»] scaffold0472 (1 HSPs)
scaffold0472 (16-220)||(3186-3390)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 51052618 - 51052350
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51052618 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 51052519  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51052518 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 51052419  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51052418 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 51052350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 11909107 - 11909375
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11909107 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatcattgcttggcgacttctgagg 11909206  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11909207 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggctatgtgtttctggatgtgggattgtcgaagatgtttctc 11909306  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11909307 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcaggattggttaggcgtggtag 11909375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 35541187 - 35540919
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  35541187 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 35541088  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| || ||||| ||| |||||||||||||||||||||||||| |||    
T  35541087 gatcggttacccacaaaacataatttggcaaatcgtggcattctatctgtggaggaacgattatgcgttgctggatgtgggattgtcgaagatgttactc 35540988  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          ||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  35540987 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtag 35540919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 6050741 - 6050473
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||    
T  6050741 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 6050642  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || ||| |||||||||||||||||||||||||| |||    
T  6050641 gatcggttacctacaaaacttaatttggcaaattgtggcattctatctgtggaggagcggttctgcgttgctggatgtgggattgtcgaagatgttactc 6050542  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          ||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  6050541 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtag 6050473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 16917842 - 16917938
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 143  Q
    |||||||| ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||| |||||||| |||  ||||||||    
T  16917842 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttgg 16917938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 47623111 - 47623192
Alignment:
Q  48 atatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 129  Q
    ||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| || ||||||||    
T  47623111 atatggaattaatttggcataaacaggtacctctcaaagtatctattcttgcttggcggcttttgagggaccgcttacctac 47623192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 43388474 - 43388392
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 129  Q
    |||||||| ||| |||||||||||||||||||| | ||||| |||||||||||||||||| |  |||||||||| ||||||||    
T  43388474 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgattgttgagggatcgtttacctac 43388392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 210
Target Start/End: Original strand, 37191243 - 37191406
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 146  Q
    |||||||| ||| | |||||||||| ||||| | | ||||| | ||||||||||||||| ||  |||| ||||| |||||||| |||   || ||||||     
T  37191243 aatatggagttaatctggcataaactggttcatttaaaagtttatatccttgcttggcggctgttgagagatcgattacctactaaatccaacttggcag 37191342  T
Q  147 atcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 210  Q
    |||||||||||  || ||||||||| || || |||||  | |||||||||  ||| ||||||||    
T  37191343 atcgtggcattacatctgtggaggatcgattttgtgtcacgggatgtgggcatgttgaagatgt 37191406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 12825337 - 12825069
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  12825337 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaagttcctctcaaagtatgtatccttgcttggcgacttctgagg 12825238  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12825237 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 12825138  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12825137 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 12825069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 30732316 - 30732584
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30732316 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatctttgcttggcgacttctgagg 30732415  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30732416 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 30732515  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          || |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30732516 atttgtttttgtcttgtacaacttttggtgcattatagccgatggtgcgggattggttaggcgtggtag 30732584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 27117163 - 27117431
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27117163 gacatcacaggagcagatccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 27117262  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    || |||||||| |||||||||||||||| ||| ||||||||||||| | ||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  27117263 gaccggttacccacaaaacttaatttggtaaaccgtggcattctatctatggaggagcggttatgtgtttctggctgtgggaatgtcgaagatgtttctc 27117362  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          ||||||||||||| |||||||||||||||||| ||||||||||||| |||||||    
T  27117363 atttgtttttgtcttgtgcaacttttggagcattatggccgatggtgtgggattggttaggagtggtag 27117431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 42513858 - 42513590
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||    
T  42513858 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 42513759  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| |||    
T  42513758 gatcggttacctacaaaacttaatttggcaaatcgtgacattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 42513659  T
Q  216 a---tttgnnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |   |||        ||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  42513658 atttttttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtag 42513590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 100 - 281
Target Start/End: Original strand, 12820035 - 12820219
Alignment:
Q  100 ttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggatt 199  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12820035 ttggcgacttatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggatt 12820134  T
Q  200 gtcgaagatgtttctcatttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    ||||||||||| |||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12820135 gtcgaagatgtctctcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 12820219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 23238521 - 23238318
Alignment:
Q  17 acatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgaggg 116  Q
    |||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| ||||||||||||||| ||||| |||| |    
T  23238521 acatcacaggagcaaccccagttacaccataatatggagttaatttggcataaataggttcctctcaaagtttctatccttgcttggagacttttgagag 23238422  T
Q  117 atcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctca 216  Q
    ||||||||||||| |||  |||||||||||| ||||||||| ||  | |||||| |||||| |||||||||||||||||||  || |||||||||  |||    
T  23238421 atcggttacctacgaaaagtaatttggcaaaccgtggcattttagctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatca 23238322  T
Q  217 tttg 220  Q
    ||||    
T  23238321 tttg 23238318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 28535677 - 28535871
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| |||||||||| |||||||| || || ||||| ||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  28535677 gacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcatacacaggttcctctcaaagtttctatccttgcttggcgacttctgagg 28535776  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 210  Q
    ||||||||||||||||||  |||||||||||| ||||||||| ||  | |||||| || | | ||||||||||| ||||||| ||| ||||||||    
T  28535777 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagatgtgtgtttctggttgtgggaatgtagaagatgt 28535871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 32 - 220
Target Start/End: Complemental strand, 8228148 - 8227960
Alignment:
Q  32 ccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaa 131  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||| |    
T  8228148 ccccagttacaccataatatggagttaatttgacataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatcggttacctacga 8228049  T
Q  132 aacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctcatttg 220  Q
    ||  |||||||||||| |||| |||| ||  | |||||| |||||| |||||||||||||||| ||  || |||||||||  |||||||    
T  8228048 aaagtaatttggcaaaccgtgacattttacctttggaggcgcggttgtgtgtttctggatgtgagaacgttgaagatgttaatcatttg 8227960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 35983793 - 35983983
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| |||||||||| |||||||| || || ||||| ||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  35983793 gacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcttacacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 35983892  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaag 206  Q
     |||||||||||||||||  |||||||||||| | || |||| ||  | |||||| |||||| ||||||| ||| ||||||| ||| ||||    
T  35983893 aatcggttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgtttttggttgtgggaatgtagaag 35983983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 19255155 - 19255265
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 146  Q
    |||||||| ||| |||||||||||||| || ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||  |||||||||||    
T  19255155 aatatggagttaatttggcataaacagatttctctcaaagtatctatccttgcttggcggtttctgagggatcggttacctacaaaaaataatttggcaa 19255254  T
Q  147 atcgtggcatt 157  Q
    || ||||||||    
T  19255255 attgtggcatt 19255265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 24 - 210
Target Start/End: Complemental strand, 42928261 - 42928075
Alignment:
Q  24 aggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggtt 123  Q
    |||| |||||||||||||| |  |||||||| ||| ||||| |||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||    
T  42928261 aggaacagccccagttacatccaaatatggagttaatttggtataaacaggttcctctcaaagtctctatccttgtttggcggcttctgagggatcggtt 42928162  T
Q  124 acctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 210  Q
    | ||||||||  ||||||| ||||  |||||||| ||    |||||| |||||| ||||| |||||||| ||||  || ||||||||    
T  42928161 aactacaaaaaataatttgacaaactgtggcattttacccttggaggtgcggttgtgtgtctctggatgcgggaacgttgaagatgt 42928075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 31641649 - 31641513
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| |||||||||| || ||||| || || ||||| ||| ||||||||| |||||||||||| ||||| ||||||||||| ||| |||| ||||||    
T  31641649 gacatcacaggagcagcctcacttacatcaaaacatggagttaatttggcatacacaggttcctct-aaagtttctatccttgcatggagactactgagg 31641551  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtgg 153  Q
    ||||||||||||||||||  |||||||||||| |||||    
T  31641550 gatcggttacctacaaaaaataatttggcaaaccgtgg 31641513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 156 - 281
Target Start/End: Complemental strand, 3418781 - 3418653
Alignment:
Q  156 ttctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctcatttgnnnnnnn---gtgcaacttttggtgcattatggcc 252  Q
    |||||| ||||||||| || ||||| ||| |||||||||||||||||||||||||| ||||||||          |||||||||||||||||||||||||    
T  3418781 ttctatctgtggaggaacgattatgcgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggcc 3418682  T
Q  253 gatggtgcgggattggttaggcgtggtag 281  Q
    |||||||||| |||||||||| |||||||    
T  3418681 gatggtgcggcattggttaggagtggtag 3418653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 25857457 - 25857553
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 143  Q
    |||||||| ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||| |||||||| |||  ||||||||    
T  25857457 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttgg 25857553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 27767149 - 27767063
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaa 133  Q
    |||||||| ||| |||||||||||||||||||| | ||||| | ||||||||||||||||||  |||||||||| ||||||||||||    
T  27767149 aatatggagttaatttggcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagggatcgtttacctacaaaa 27767063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 10776870 - 10776789
Alignment:
Q  48 atatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 129  Q
    ||||||| ||| |||||||||||||||||||  | ||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  10776870 atatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgctgagggatcgtttacctac 10776789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 8300215 - 8300311
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 143  Q
    |||||||| ||| |||||||||||||||||||| | ||||| |||||||||| |||||||||  |||||||||| |||||||| |||  ||||||||    
T  8300215 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgtttggcgactgttgagggatcgcttacctactaaatctaatttgg 8300311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 33385407 - 33385489
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 129  Q
    |||||||| ||| |||||||||||||||||||  | ||||| ||||||||||||||||||||  |||||||||| ||||||||    
T  33385407 aatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgttgagggatcgtttacctac 33385489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 47 - 183
Target Start/End: Original strand, 18359125 - 18359260
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 146  Q
    |||||||| ||| | | |||||||||||||||| | ||||| || ||||||||||||||  |  |||||||||| |||||||| |||   || ||||||     
T  18359125 aatatggagttaatctagcataaacaggttcctttaaaagtttcaatccttgcttggcggttgttgagggatcgtttacctactaaatccaacttggcag 18359224  T
Q  147 atcgtggcattctatatgtggaggagcggttatgtgt 183  Q
    ||||| ||||| ||||||||||||| ||||| |||||    
T  18359225 atcgt-gcattatatatgtggaggatcggttttgtgt 18359260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 153
Target Start/End: Complemental strand, 33169775 - 33169659
Alignment:
Q  37 gttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaactt 136  Q
    |||||| || |||||||| ||  ||||||| |||||||| ||| | ||||| |||||  ||||||||||  | |||||||| ||||||||||| ||||      
T  33169775 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 33169676  T
Q  137 aatttggcaaatcgtgg 153  Q
    |||||||||| ||||||    
T  33169675 aatttggcaagtcgtgg 33169659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 157
Target Start/End: Complemental strand, 27795588 - 27795480
Alignment:
Q  49 tatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaat 148  Q
    |||||| ||||| ||||| |||||||| |||||||||||  |  || ||||||||||  |  |||||||||| || ||||| |||   ||||||||||||    
T  27795588 tatggagttagtctggcacaaacaggtacctctcaaagttacagtctttgcttggcggttgttgagggatcgtttgcctactaaagccaatttggcaaat 27795489  T
Q  149 cgtggcatt 157  Q
    |||||||||    
T  27795488 cgtggcatt 27795480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 26073022 - 26072917
Alignment:
Q  24 aggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggtt 123  Q
    |||| |||||||| || || || ||| |||| ||| ||||||||||| | |||||| | |||||  ||||| ||| |||||||||  |||||||||| ||    
T  26073022 aggaacagccccatttgcatcaaaatttggagttaatttggcataaatatgttcctttgaaagtccctatctttgtttggcgactgttgagggatcgatt 26072923  T
Q  124 acctac 129  Q
    ||||||    
T  26072922 acctac 26072917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 4552307 - 4552039
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  4552307 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaataggttcctcttaaagtatctatccttgcttggcgacttctgagg 4552208  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4552207 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaaaatgtttctc 4552108  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4552107 atttgtttttgtcttgtgcaacttttggtgcattatgaccgatggtgcgggattggttaggcgtggtag 4552039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 41207123 - 41207013
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 146  Q
    |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||    
T  41207123 aatatggagttaatttggcataaacaggttcctctcaaagtctctatccttgcttggcggcttctgagggatcggttacctacaaaaaataatttggcaa 41207024  T
Q  147 atcgtggcatt 157  Q
    |||||||||||    
T  41207023 atcgtggcatt 41207013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 15917761 - 15917655
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 146  Q
    ||||| || ||| ||| ||||||| |||||||||| ||||| | ||||||||||||| |||| ||||||||||| |||||||||||| ||||||||||||    
T  15917761 aatattgagttaatttcgcataaataggttcctctgaaagtctgtatccttgcttggggactgctgagggatcgtttacctacaaaagttaatttggcaa 15917662  T
Q  147 atcgtgg 153  Q
    |||||||    
T  15917661 atcgtgg 15917655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 49 - 195
Target Start/End: Complemental strand, 28252825 - 28252679
Alignment:
Q  49 tatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaat 148  Q
    |||||| ||| |||||||||||||||| ||||| ||||||||||| ||||||||||| ||| |||||||||| |||||||| ||    |||||||||||     
T  28252825 tatggaattaatttggcataaacaggtacctctaaaagtatctattcttgcttggcggcttttgagggatcgcttacctacgaagggaaatttggcaaac 28252726  T
Q  149 cgtggcattctatatgtggaggagcggttatgtgtttctggatgtgg 195  Q
    | ||||||| |  || |||||| ||||||||||||||| || |||||    
T  28252725 catggcattattcatatggaggggcggttatgtgtttccggttgtgg 28252679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 12645643 - 12645557
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaa 133  Q
    |||||||| ||| ||||||||||||||||| |||| ||||| || |||||||||||||| ||  |||||||||| ||||||||||||    
T  12645643 aatatggagttaatttggcataaacaggtttctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaa 12645557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 153
Target Start/End: Original strand, 17764995 - 17765101
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 146  Q
    |||||||| ||| | ||||||||||||| |||||| ||||| ||||| ||||||||||| ||  |||||||||  |||||||| |||   ||||||||||    
T  17764995 aatatggagttaatatggcataaacaggctcctcttaaagtctctattcttgcttggcggctattgagggatcatttacctacgaaagcaaatttggcaa 17765094  T
Q  147 atcgtgg 153  Q
    | |||||    
T  17765095 accgtgg 17765101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 168
Target Start/End: Complemental strand, 14439857 - 14439738
Alignment:
Q  49 tatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaat 148  Q
    |||||| ||| | |||||||||||||||||| | ||||| |||||| | ||||| |||||  |||||||||| |||||||| |||   ||||||| | |     
T  14439857 tatggagttaatctggcataaacaggttcctttaaaagtttctatcttggcttgacgactgttgagggatcgtttacctactaaatcaaatttggtagaa 14439758  T
Q  149 cgtggcattctatatgtgga 168  Q
    ||||| ||||||| ||||||    
T  14439757 cgtgggattctatctgtgga 14439738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 40176775 - 40176672
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 146  Q
    |||||||| ||||| ||||| |||||||| ||||| ||||| ||  |||||||||||||  |  |||||||||| |||||||| ||| | |||||| |||    
T  40176775 aatatggagttagtctggcacaaacaggtacctctaaaagtttcagtccttgcttggcggttgttgagggatcgtttacctactaaagtcaatttgacaa 40176676  T
Q  147 atcg 150  Q
    ||||    
T  40176675 atcg 40176672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 38604407 - 38604516
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 146  Q
    |||||||| ||| | ||||||||||| || ||||| ||||| || |||||||| ||||  ||  | || ||||| |||||||||| | | |||||||||     
T  38604407 aatatggagttaatctggcataaacaagtacctctaaaagtttcaatccttgcatggctgctgttaagagatcgtttacctacaatagtcaatttggcat 38604506  T
Q  147 atcgtggcat 156  Q
    ||||||||||    
T  38604507 atcgtggcat 38604516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 2364415 - 2364147
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  2364415 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 2364316  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| |||    
T  2364315 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 2364216  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          ||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  2364215 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtag 2364147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 19920231 - 19920499
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19920231 gacatcacaggagaagccccagttacaccatcatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 19920330  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  19920331 gatcggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaagatgcttctc 19920430  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19920431 atttgtttttgtcttgtgtaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 19920499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 7312914 - 7312647
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||  |||||    
T  7312914 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtacctctcaaagtatctatccttgcttggcgactaatgagg 7312815  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  7312814 gatcggttacctacaaaacttaatttggcaaatcgtggcattctgtctgtggaggagcggctttgtgtttctggatgtgggattgtcgaagatgtttctc 7312715  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  7312714 atttgtttttgtcttgtgcaacttttggtgcatta-agccgatggtgcgggattggttaggcgtggtag 7312647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 10323573 - 10323841
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  10323573 gacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 10323672  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| || ||| ||||||||||| ||| |||||||||||||||||||||||||| |||    
T  10323673 gatcggttacctacaaaacttaatttggcaactcgtggcattctatctggggatgagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 10323772  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          ||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  10323773 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtag 10323841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 34332817 - 34333085
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  34332817 gacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcaacttctgaga 34332916  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    ||||| ||||||||||||  |||||||||||| ||||||||| ||  | |||||| |||||| |||||||||||||||||||  || |||||||||  ||    
T  34332917 gatcgattacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatc 34333016  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          ||| ||||||| ||||||||||||| ||||||||||  ||| |||| |||||||    
T  34333017 atttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggctaggagtggtag 34333085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 40930530 - 40930724
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||| || ||||| || || || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40930530 gacatcacaggagcaacctcagttgcatcaaaacatggagttagtttgacataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagg 40930629  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 210  Q
    ||| ||||||||||||||  |||||||||||| |||||| || ||  | |||||| |||||| ||||||||||| |||||||  |||||||||||    
T  40930630 gattggttacctacaaaaaataatttggcaaaccgtggccttttacctttggaggcgcggttgtgtgtttctggttgtgggaacgtcgaagatgt 40930724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 7032426 - 7032339
Alignment:
Q  46 taatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaa 133  Q
    |||| |||| || |||||||| |||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||    
T  7032426 taatttggagttggtttggcacaaacaggttcctctcaaaatttctatccttgcatggcgacttctgagggatcggttacctacaaaa 7032339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 29523778 - 29523860
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 129  Q
    |||||||| ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||| ||||||||    
T  29523778 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgtttacctac 29523860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 11203926 - 11203844
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 129  Q
    |||||||| ||| |||||||||||||||||||| | ||||| ||||| ||||||||||||||  |||||||||| ||||||||    
T  11203926 aatatggagttaatttggcataaacaggttcctttaaaagtttctatacttgcttggcgactgttgagggatcgtttacctac 11203844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 33496653 - 33496572
Alignment:
Q  48 atatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 129  Q
    ||||||| ||| |||||||||||||||||||| | ||||| |||||| |||||||||||||  |||||||||| ||||||||    
T  33496653 atatggagttaatttggcataaacaggttcctttaaaagtttctatcattgcttggcgactgttgagggatcgtttacctac 33496572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 12342259 - 12342340
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 129  Q
    |||||||| ||| |||||||||||||||||| | | ||||| ||||||||||||||||||||  |||||||||| ||||||||    
T  12342259 aatatggagttaatttggcataaacaggttctt-taaaagtttctatccttgcttggcgactgttgagggatcgtttacctac 12342340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 153
Target Start/End: Original strand, 26771022 - 26771128
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 146  Q
    |||||||| ||| | ||||||||||||| |||||| ||||| ||||| ||| ||||||| ||| |||||||||| |||||||| |||   ||||||||||    
T  26771022 aatatggagttaatgtggcataaacaggctcctcttaaagtctctattcttacttggcggcttttgagggatcgtttacctacgaaagcaaatttggcaa 26771121  T
Q  147 atcgtgg 153  Q
    | |||||    
T  26771122 accgtgg 26771128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 7031063 - 7031146
Alignment:
Q  60 tttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 143  Q
    |||||||||||||||||||| | ||| | ||||||||||||||||| ||  |||||||||| |||||||| |||  ||||||||    
T  7031063 tttggcataaacaggttcctttaaaactttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 7031146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 168
Target Start/End: Original strand, 35214404 - 35214525
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 146  Q
    |||||||| ||| | |||||||||||||||||| | ||||| |||||||||| ||||||  |  |||||||||| || ||||| |||   |||||| ||     
T  35214404 aatatggagttaatctggcataaacaggttcctttaaaagtttctatccttgtttggcggatgttgagggatcgtttgcctactaaatcaaatttgccag 35214503  T
Q  147 atcgtggcattctatatgtgga 168  Q
    | ||||| ||||||||||||||    
T  35214504 aacgtgggattctatatgtgga 35214525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 36801108 - 36801190
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 129  Q
    |||||||| ||| ||| ||||||| |||||||  | ||||| | |||||||||||||| ||| ||||||||||| ||||||||    
T  36801108 aatatggagttaatttagcataaataggttcccttaaaagtttatatccttgcttggcaactgctgagggatcgtttacctac 36801190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 963186 - 963295
Alignment:
Q  37 gttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaactt 136  Q
    |||||| || |||||||| ||  ||||||| |||||||| ||| | ||||| |||||  ||||||||||  | |||||||| ||||||||||| ||||      
T  963186 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 963285  T
Q  137 aatttggcaa 146  Q
    ||||||||||    
T  963286 aatttggcaa 963295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 153
Target Start/End: Complemental strand, 2755959 - 2755843
Alignment:
Q  37 gttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaactt 136  Q
    |||||| || |||||||| ||  ||||||| |||||||| ||| | ||||| |||||  ||||||||||  | |||||||| ||||||||||| |||       
T  2755959 gttacatcaaaatatggagttgatttggcacaaacaggtacctttgaaagtgtctatatttgcttggcgtttgctgagggaccggttacctactaaataa 2755860  T
Q  137 aatttggcaaatcgtgg 153  Q
    |||||||||| ||||||    
T  2755859 aatttggcaagtcgtgg 2755843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 171
Target Start/End: Complemental strand, 19890785 - 19890661
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 146  Q
    |||||||| ||| | |||||||||||||||||| | ||||| || |||||||| | |||  |  |||||||||| |||||||| |||   || ||||||     
T  19890785 aatatggagttaatctggcataaacaggttcctttaaaagtttccatccttgcattgcggttgttgagggatcgattacctactaaatccaacttggcag 19890686  T
Q  147 atcgtggcattctatatgtggagga 171  Q
    |||||||||||  || |||||||||    
T  19890685 atcgtggcattacatttgtggagga 19890661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 150
Target Start/End: Complemental strand, 16179042 - 16178952
Alignment:
Q  60 tttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcg 150  Q
    |||||||||||||||| ||||| |||||||||||  |||| ||||| ||  ||| ||||||  ||||||| |||   ||||||||||||||    
T  16179042 tttggcataaacaggtacctcttaaagtatctatttttgcgtggcgcctgatgaaggatcgtctacctactaaagagaatttggcaaatcg 16178952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 182; Significance: 5e-98; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 11207 - 11475
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| |||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11207 gacatcacaggagcagacccagctacaccataatctggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctcagg 11306  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||| ||    
T  11307 gatcggttacctacaaaacttaatttggcaaaccgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaaaatgtttttc 11406  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          ||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  11407 atttgtttttgtcttgtgcaacttttggagcattatggccgatggtgcgggattggttaggagtggtag 11475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 182; Significance: 5e-98; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 105845 - 106113
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||    
T  105845 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 105944  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| |||    
T  105945 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 106044  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          ||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  106045 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtag 106113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 5e-98; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 7924524 - 7924256
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||    
T  7924524 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 7924425  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| |||    
T  7924424 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 7924325  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          ||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  7924324 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtag 7924256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 8299941 - 8299673
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||| ||||||| |||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  8299941 gacatcacaggagtagccccaattacaccataatttggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 8299842  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| |||    
T  8299841 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcgattatgtgttgctggatgtgggattgtcgaagatgttactc 8299742  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          ||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  8299741 atttgtttttgtcctgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtag 8299673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 172241 - 171973
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||||  ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  172241 gacatcacaggagcagaaccagttacaccataaaatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 172142  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    || |||||||| |||||||||||||||| ||| |||| |||||||| | ||||||||||||||||||||||||| ||||| | |||||||||||||||||    
T  172141 gaccggttacccacaaaacttaatttggtaaaccgtgacattctatctatggaggagcggttatgtgtttctggctgtggtaatgtcgaagatgtttctc 172042  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          ||||||||||||  |||||||||||||||||||||||||||||||| |||||||    
T  172041 atttgtttttgtcttgtgcaacttttgacgcattatggccgatggtgcgggattggttaggagtggtag 171973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 13396526 - 13396258
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||||||||| ||||| ||| ||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||     
T  13396526 gacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaagttcctctcaaagtatctatccttgcttggcgactcctgaga 13396427  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    ||||||||||||||||||  |||||||||||| ||||||||| ||  | |||||| |||||| |||||||||||||||||||  || |||||||||  ||    
T  13396426 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatc 13396327  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          ||| ||||||| ||||||||||||| ||||||||||  ||| |||| |||||||    
T  13396326 atttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggctaggagtggtag 13396258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 26 - 220
Target Start/End: Complemental strand, 32266692 - 32266498
Alignment:
Q  26 gagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttac 125  Q
    ||||| || ||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  32266692 gagcaaccacagttacaccataatttggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatcggttac 32266593  T
Q  126 ctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctcatttg 220  Q
    |||| |||  |||||||||||| ||||||||| ||  | |||||| |||||| |||||||||||||||||||  || |||||||||  |||||||    
T  32266592 ctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttg 32266498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 41665371 - 41665639
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||||||||| ||||| ||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | || ||     
T  41665371 gacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgattcctaaga 41665470  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    |||| |||||||||||||  |||||||||||| | || |||| ||  | |||||| |||||| |||||||||||||||||||  || |||||||||  ||    
T  41665471 gatcagttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatc 41665570  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          ||| ||||||| ||||||||||||| ||||||||||  ||| |||| |||||||    
T  41665571 atttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggctaggagtggtag 41665639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 9922739 - 9922545
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| |||||||||| || ||||| || ||  |||| ||| ||||||||| |||||||||||||||||| ||||||||||| || ||||||||||||    
T  9922739 gacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctatccttgcatgacgacttctgagg 9922640  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 210  Q
    ||||||||||||||||||  |||||||||||| ||||||||| ||  | |||||| |||| | ||||||||||| ||||||| ||| ||||||||    
T  9922639 gatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctggttgtgggaatgtagaagatgt 9922545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 47 - 143
Target Start/End: Complemental strand, 20824403 - 20824307
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 143  Q
    |||||||| ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||| |||||||| |||  ||||||||    
T  20824403 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttgg 20824307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 13200230 - 13200067
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 146  Q
    |||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||  ||  |||||||||| ||||||||||||   |||||||||     
T  13200230 aatatggagttagtttggcataaacaggttcctctaaaagtttcaatccttgcttggcagctattgagggatcgtttacctacaaaatacaatttggcag 13200131  T
Q  147 atcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 210  Q
    | ||  | ||||||  | ||||||  ||||| |||||| |||| ||||||  ||| ||||||||    
T  13200130 agcgcagaattctacctatggaggctcggttttgtgttactgggtgtgggcatgttgaagatgt 13200067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 186 - 281
Target Start/End: Complemental strand, 20497052 - 20496954
Alignment:
Q  186 ctggatgtgggattgtcgaagatgtttctcatttgnnnnnnn---gtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||||||||||||||||||||||| ||||||||          ||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  20497052 ctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtag 20496954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 17699589 - 17699507
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 129  Q
    |||||||| ||| |||||||||||||||||||  | ||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  17699589 aatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgctgagggatcgtttacctac 17699507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 47 - 168
Target Start/End: Complemental strand, 2170449 - 2170328
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 146  Q
    |||||||| ||| | |||||||||||||||||| | ||||| |||||||||||||||||||   |||||||||| |||||||| |||   ||||||| |     
T  2170449 aatatggagttaatctggcataaacaggttcctttaaaagtttctatccttgcttggcgaccgttgagggatcgtttacctactaaatcaaatttggtag 2170350  T
Q  147 atcgtggcattctatatgtgga 168  Q
    | ||||| ||||||| ||||||    
T  2170349 aacgtgggattctatctgtgga 2170328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 37434239 - 37434157
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 129  Q
    |||||||| ||| ||||||||||||| |||||| | ||||| ||||| ||||||||||||||  |||||||||| ||||||||    
T  37434239 aatatggagttaatttggcataaacatgttcctttaaaagtctctattcttgcttggcgactgttgagggatcgtttacctac 37434157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 34137011 - 34137096
Alignment:
Q  62 tggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaa 147  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||| ||| ||| |||||| |||||||| |||   |||||||||||    
T  34137011 tggcataaacaggtacctctcaaagtctctattcttgcttggcggcttatgatggatcgtttacctacgaaagaaaatttggcaaa 34137096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 220
Target Start/End: Complemental strand, 2529958 - 2529820
Alignment:
Q  82 caaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgt 181  Q
    |||||| || |||||||||||||| ||  |||||||||| ||||||||||||   ||||||| | ||||||| ||||||  | ||||||  ||||| |||    
T  2529958 caaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaatttggtagatcgtggaattctacttttggaggctcggttttgt 2529859  T
Q  182 gtttctggatgtgggattgtcgaagatgtttctcatttg 220  Q
    ||| | || ||||||  ||| ||||||||  ||||||||    
T  2529858 gttacagggtgtgggcatgttgaagatgtgactcatttg 2529820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 13879522 - 13879630
Alignment:
Q  49 tatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaat 148  Q
    |||||| ||||| ||||| ||| |||| |||||||||||  |  || ||||||||||  |  |||||||||| |||||||| |||   ||||||||||||    
T  13879522 tatggagttagtctggcacaaataggtacctctcaaagttacagtctttgcttggcggttgttgagggatcgtttacctactaaagccaatttggcaaat 13879621  T
Q  149 cgtggcatt 157  Q
    |||||||||    
T  13879622 cgtggcatt 13879630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 43270542 - 43270475
Alignment:
Q  62 tggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 129  Q
    |||||||||||||||||| | ||||| ||||||||| ||||||||||  ||| |||||| || |||||    
T  43270542 tggcataaacaggttcctttaaaagtttctatccttacttggcgactgttgaaggatcgtttgcctac 43270475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 25090494 - 25090384
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 146  Q
    |||||||| ||||| | ||| |||||||| ||||| ||||| || ||||||||||||||  |  ||||||||||  ||||||| |||   |||||| |||    
T  25090494 aatatggagttagtctagcacaaacaggtacctctaaaagtttcaatccttgcttggcggttgttgagggatcgactacctactaaagccaatttgacaa 25090395  T
Q  147 atcgtggcatt 157  Q
    |||| ||||||    
T  25090394 atcgcggcatt 25090384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 182; Significance: 5e-98; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 4938130 - 4938398
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||    
T  4938130 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 4938229  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| |||    
T  4938230 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 4938329  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          ||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  4938330 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtag 4938398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 11277254 - 11277458
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  11277254 gacatcacaggagcaaccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaga 11277353  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    |||||||||||||| |||  |||||||||||| ||||||||| ||  | |||||| |||||| |||||||||||||||||||  || |||||||||  ||    
T  11277354 gatcggttacctacgaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatc 11277453  T
Q  216 atttg 220  Q
    |||||    
T  11277454 atttg 11277458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 47877121 - 47876917
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||||||||||||||| || |||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  47877121 gacatcacaggagcagccccagttacatcaaaatagggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgaga 47877022  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    |||| |||||||||||||  |||||||||||| ||||||||| ||  | |||||| |||||| |||||||||||||| ||||  || |||||||||  ||    
T  47877021 gatcagttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgcgggaacgttgaagatgttaatc 47876922  T
Q  216 atttg 220  Q
    |||||    
T  47876921 atttg 47876917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 29968113 - 29967909
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||| |||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||  ||||| ||||     
T  29968113 gacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttgaggacttttgaga 29968014  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    |||||||||||||| |||  |||||||||||| | ||||||| ||  | |||||| |||||| |||||||||||||||||||  || |||||||||  ||    
T  29968013 gatcggttacctacgaaaagtaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatc 29967914  T
Q  216 atttg 220  Q
    |||||    
T  29967913 atttg 29967909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 130 - 281
Target Start/End: Original strand, 31177421 - 31177575
Alignment:
Q  130 aaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctcatttg---nnnnnn 226  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||             
T  31177421 aaaacttaatttgacaaatcgtggcattctatatgtggaggagcggttatgtgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtct 31177520  T
Q  227 ngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
     ||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  31177521 tgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtag 31177575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 235439 - 235614
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||||||||||||||| || |||||||| ||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  235439 gacatcacaggagcagccccagttacatcaaaatatggagttaatttggcataaacaggttcatctcaaagtctctatccttgcttggcgacttctgagg 235538  T
Q  116 gatcggttacctacaaaactta--atttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctgg 189  Q
    ||||||||||||||||||   |  |||||||||| ||||||||| ||  | |||||| |||||| |||||||||||    
T  235539 gatcggttacctacaaaaaaaatcatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 235614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 37919682 - 37919487
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||||||||| ||||| ||| ||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||     
T  37919682 gacatcacaggagcagccccaattacatcatcatatgaagttaatttggtataaacaggttcctctcaaagtatctatccttgcttggcgactcctgaga 37919583  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtt 211  Q
    ||| ||||||||||||||  |||||||||||| ||| ||||| ||  | |||||| |||||| ||||||||| | |||||||  || |||||||||    
T  37919582 gattggttacctacaaaaaataatttggcaaaccgttgcattttacctttggaggcgcggttgtgtgtttctagttgtgggaacgttgaagatgtt 37919487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 17720773 - 17720569
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| |||||||||| || ||||| || ||  |||| ||| ||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||    
T  17720773 gacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctatccttgcatggcgacttctgagg 17720674  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    ||||||||||||||||||  |||||||||||| ||||||||| ||  | |||||| |||| | ||||||||| | ||||||| ||  |||||||||  ||    
T  17720673 gatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctagttgtgggaatgaagaagatgttaatc 17720574  T
Q  216 atttg 220  Q
    |||||    
T  17720573 atttg 17720569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 25619566 - 25619403
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 146  Q
    |||||||| ||| | |||||||||||||||||| | ||||| |||||||||||||||||  |  ||||||| || |||||||| |||   || ||||||     
T  25619566 aatatggagttaatatggcataaacaggttcctttaaaagtttctatccttgcttggcggttgttgagggaacgattacctactaaatccaacttggcag 25619467  T
Q  147 atcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 210  Q
    |||||||||||  || ||||||||| || || |||||  | |||||||||  ||| ||||||||    
T  25619466 atcgtggcattgcatctgtggaggaccgattttgtgtcacaggatgtgggcatgttgaagatgt 25619403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 18532735 - 18532653
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 129  Q
    |||||||| ||| | | |||||||||||||||| | ||||| | ||||||||||||||||||  |||||||||| ||||||||    
T  18532735 aatatggagttaatctcgcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagggatcgtttacctac 18532653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 169
Target Start/End: Complemental strand, 37254865 - 37254743
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 146  Q
    |||||||| ||| | ||||||||||||||| || | ||||| || ||||||||||||||  |  |||||||||| |||||||| |||   || ||||||     
T  37254865 aatatggagttaatctggcataaacaggttactttaaaagtttcaatccttgcttggcggttgttgagggatcgtttacctactaaatccaacttggcag 37254766  T
Q  147 atcgtggcattctatatgtggag 169  Q
    || |||||||| ||| |||||||    
T  37254765 attgtggcattatatctgtggag 37254743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 5e-98; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 23642593 - 23642861
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||    
T  23642593 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 23642692  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| |||    
T  23642693 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 23642792  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    |||||          ||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  23642793 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtag 23642861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 13270893 - 13271161
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||    
T  13270893 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 13270992  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| ||     
T  13270993 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgagttactggatgtgggattgtcgaagatgttacta 13271092  T
Q  216 at---ttgnnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    ||   ||        ||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  13271093 atttatttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtag 13271161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 47418942 - 47418682
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  47418942 gacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 47418843  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||| ||| | |||||||||||||||||||||||| |||    
T  47418842 gatcggttacctacaaaacttaatttggcaactcgtggcattctatctggggaggagcggttatgcgttgcaggatgtgggattgtcgaagatgttactc 47418743  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttagg 273  Q
    |||||          ||||||||||||||||||||||||||||||||||| ||||||||||    
T  47418742 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttagg 47418682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 47685897 - 47686165
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| | ||||||||| |||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  47685897 gacatcacaagagcagcccaagttacaccataatctggacttaatttgacataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaga 47685996  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    ||||||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47685997 gatcggttacctacaaaacataatttggcaaaccgtggcattttatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaagatgtttctc 47686096  T
Q  216 atttg---nnnnnnngtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
     ||||          ||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  47686097 gtttgtttttgtcttgtgcaacttttagtgcattatggccgatggtgcgggattggttaggagtggtag 47686165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 15740359 - 15740155
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || |     
T  15740359 gacatcataggagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgcga 15740260  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    ||||||||||||||||||  ||||||| |||  ||||||||| ||  | |||||| |||||| ||||||||||| ||||||| |||  ||||||||  ||    
T  15740259 gatcggttacctacaaaaaataatttgacaagccgtggcattttacctttggaggcgcggttgtgtgtttctgggtgtgggaatgttaaagatgttaatc 15740160  T
Q  216 atttg 220  Q
    |||||    
T  15740159 atttg 15740155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 1828542 - 1828746
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||  || |     
T  1828542 gacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagactattgcga 1828641  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    ||| ||||||||||||||  |||||||||||| ||||||||| ||  | |||||| |||||| ||||||||||| ||||||| ||| |||||||||  ||    
T  1828642 gataggttacctacaaaaactaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttgatc 1828741  T
Q  216 atttg 220  Q
    |||||    
T  1828742 atttg 1828746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 19755405 - 19755198
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| | ||||||||||| || || ||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  19755405 gacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgactcctgaga 19755306  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctat---atgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgttt 212  Q
    ||||||||||||||||||  |||||||||||| |||| |||| |||    | |||||| |||||| |||||||||||||||||||  || |||||||||     
T  19755305 gatcggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggttgtgtgtttctggatgtgggagcgttgaagatgtta 19755206  T
Q  213 ctcatttg 220  Q
     |||||||    
T  19755205 atcatttg 19755198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 19784401 - 19784608
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| | ||||||||||| || || ||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  19784401 gacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgactcctgaga 19784500  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctat---atgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgttt 212  Q
    ||||||||||||||||||  |||||||||||| |||| |||| |||    | |||||| |||||| |||||||||||||||||||  || |||||||||     
T  19784501 gatcggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggttgtgtgtttctggatgtgggagcgttgaagatgtta 19784600  T
Q  213 ctcatttg 220  Q
     |||||||    
T  19784601 atcatttg 19784608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 7404051 - 7403857
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||||||||||||||| || |||||| | ||| ||||||||||||| |||| | ||||||| |||||||||||||||||||||||||||    
T  7404051 gacatcacaggagcagccccagttacatcaaaatatgaagttaatttggcataaacaagttcatttcaaagtctctatccttgcttggcgacttctgagg 7403952  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 210  Q
    ||||||||||||||||||   ||||||||||| ||||||||| ||  | |||||| |||||| ||||| |||||||| ||||  || ||||||||    
T  7403951 gatcggttacctacaaaaaagaatttggcaaaccgtggcattttacgtttggaggcgcggttgtgtgtctctggatgcgggaacgttgaagatgt 7403857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 165 - 281
Target Start/End: Original strand, 159842 - 159961
Alignment:
Q  165 tggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctcatttgnnnnnnn---gtgcaacttttggtgcattatggccgatggtgcg 261  Q
    ||||||| || ||||| ||| |||||||||||||||||||||||||| ||||||||          ||||||||||||||||||||||||||||||||||    
T  159842 tggaggaacgattatgcgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcg 159941  T
Q  262 ggattggttaggcgtggtag 281  Q
    | |||||||||  |||||||    
T  159942 gcattggttagaagtggtag 159961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 55725719 - 55725822
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 146  Q
    |||||||| ||| ||||||||||||| |||||||| ||||| || |||||||||||||| ||  |||||||||| ||||||||||||   |||||||||     
T  55725719 aatatggagttaatttggcataaacaagttcctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaatttggcag 55725818  T
Q  147 atcg 150  Q
    ||||    
T  55725819 atcg 55725822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 12697920 - 12697838
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 129  Q
    |||||| | ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||| ||||||||    
T  12697920 aatatgaaattaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgtttacctac 12697838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 45472742 - 45472824
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 129  Q
    |||||||| ||| |||||||||||||||||||| | ||||| |||||||||| |||||||||  |||||||||| ||||||||    
T  45472742 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgtttggcgactgttgagggatcgtttacctac 45472824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 11587233 - 11587331
Alignment:
Q  49 tatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaa 147  Q
    |||||| ||| ||||||||||| || | ||| ||||||||||||| ||||||||||| ||||||||| |||| |||||||| |||   |||||||||||    
T  11587233 tatggagttaatttggcataaatagatacctatcaaagtatctattcttgcttggcggcttctgaggaatcgtttacctacgaaagaaaatttggcaaa 11587331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 8361207 - 8361126
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttaccta 128  Q
    |||||||| ||| |||||||||||||||||||  | ||||| |||||||||| ||||||||| |||||| |||| |||||||    
T  8361207 aatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgtttggcgactgctgaggaatcgtttaccta 8361126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 20002832 - 20002750
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 129  Q
    |||||||| ||| |||||||||||||||||| | | ||||| |||||| |||||||||| ||  |||||||||| ||||||||    
T  20002832 aatatggagttaatttggcataaacaggttcttttaaaagtttctatcattgcttggcggctgttgagggatcgtttacctac 20002750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 159; Significance: 3e-84; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 39 - 281
Target Start/End: Complemental strand, 12734240 - 12733995
Alignment:
Q  39 tacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaa 138  Q
    |||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12734240 tacatcataatatggatttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaa 12734141  T
Q  139 tttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctcatttg---nnnnnnngtgcaact 235  Q
    ||||| ||  ||||||||||||| | ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||          ||||||||    
T  12734140 tttggtaacccgtggcattctatctctggaggagcggttatgtgtttctagatgtgggaatgtcgaagatgtttctcatttgtttttgtcttgtgcaact 12734041  T
Q  236 tttggtgcattatggccgatggtgcgggattggttaggcgtggtag 281  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||    
T  12734040 tttggagcattatggccgatggtgcaggattggttaggagtggtag 12733995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 2553775 - 2553571
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| | ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||      
T  2553775 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 2553676  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    ||||||||||||||||||  |||||||||||| ||||||||| ||  | |||||| || ||| |||||||||||||||||||  || |||||||||  ||    
T  2553675 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 2553576  T
Q  216 atttg 220  Q
    |||||    
T  2553575 atttg 2553571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 18651236 - 18651430
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||||||||||||| | || |||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18651236 gacatcacaggagcagccccagttagatcaaaatatggagttaatttggcataaacaggttcctctcaaagtctctatccttgcttggcgacttctgagg 18651335  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 210  Q
    ||||||||||||||||||  |||||||| ||| ||||| ||| ||  | |||| | |||||| ||||| |||||||| ||||  || ||||||||    
T  18651336 gatcggttacctacaaaaaataatttggaaaaccgtgggattttacctttggatgcgcggttgtgtgtctctggatgcgggaccgttgaagatgt 18651430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 24767426 - 24767621
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||||||| ||||||| || |||||||| ||| ||| |||||||||||||||| ||||||| |||||||||||||| |||||||| |||    
T  24767426 gacatcacaggagcagccctagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttgacgacttcttagg 24767525  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtt 211  Q
    ||||||||||||||||||  |||||||||||||||||||||| ||  | |||||| |||||| ||||||| ||| || ||||  || |||||||||    
T  24767526 gatcggttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaacgttgaagatgtt 24767621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 21168337 - 21168220
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| |||||| ||||| ||       
T  21168337 gacatcacaggagcagccccagttacaccataatatggagttaatttggcataaataggttcctctcaaagtatctatcctagcttggagacttttgcaa 21168238  T
Q  116 gatcggttacctacaaaa 133  Q
    ||||| ||||||||||||    
T  21168237 gatcgattacctacaaaa 21168220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 17579114 - 17579210
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 143  Q
    |||||||| ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||| |||||||| |||  ||||||||    
T  17579114 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttgg 17579210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 17573688 - 17573784
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 143  Q
    |||||||| ||| |||||||||||||||||||| | ||||  ||||||||||||||||||||  |||||||||| |||||||| |||  ||||||||    
T  17573688 aatatggagttaatttggcataaacaggttcctttaaaagattctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttgg 17573784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 17606367 - 17606449
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 129  Q
    |||||||| ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||  ||||||||    
T  17606367 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcatttacctac 17606449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 21630140 - 21630226
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaa 133  Q
    |||||||| ||| |||||||||| ||||||||| | ||||| |||||||||| |||||||||  |||||||||| ||||||||||||    
T  21630140 aatatggagttaatttggcataaccaggttcctttaaaagtttctatccttgtttggcgactattgagggatcgtttacctacaaaa 21630226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 49 - 186
Target Start/End: Original strand, 14373026 - 14373163
Alignment:
Q  49 tatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaat 148  Q
    |||||| ||| |||||||||||||||| ||||| ||||||||||| ||||||||||  ||| ||||| |  | |||||||| |||   |||||||||||     
T  14373026 tatggatttaatttggcataaacaggtacctctaaaagtatctattcttgcttggcagcttttgaggaacggcttacctacgaaaggaaatttggcaaac 14373125  T
Q  149 cgtggcattctatatgtggaggagcggttatgtgtttc 186  Q
    ||||||||| | | | |||||| |||||| ||||||||    
T  14373126 cgtggcattatttctatggaggggcggttgtgtgtttc 14373163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 10577282 - 10577364
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 129  Q
    ||||| || ||| |||||||||||||||||||| | ||||| | ||||||||||||||||||  |||||||||| ||||||||    
T  10577282 aatatagagttaatttggcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagggatcgtttacctac 10577364  T

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Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 15958861 - 15958946
Alignment:
Q  62 tggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaa 147  Q
    |||||||||||||||||||| ||||| ||||| ||||||||||| ||| |||||||||  |||||||| |||   |||||||||||    
T  15958861 tggcataaacaggttcctcttaaagtctctattcttgcttggcggcttttgagggatcatttacctacgaaagcaaatttggcaaa 15958946  T

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Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 196
Target Start/End: Original strand, 20883066 - 20883215
Alignment:
Q  47 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 146  Q
    |||||||| ||| | ||||||||| |||||||| | ||||| ||||||||||||||||| ||  |||||||| | |||||||| |||   || |||| |     
T  20883066 aatatggagttaatctggcataaataggttcctttaaaagtttctatccttgcttggcggctgttgagggattgtttacctactaaatcgaacttggtag 20883165  T
Q  147 atcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggg 196  Q
    ||||||||||| ||| ||||||||  ||||| |||||  | |||||||||    
T  20883166 atcgtggcattatatctgtggaggctcggttttgtgtcacgggatgtggg 20883215  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 146
Target Start/End: Complemental strand, 13937817 - 13937708
Alignment:
Q  37 gttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaactt 136  Q
    |||||| || |||||||| ||  ||||||| |||||||| ||| | ||||| |||||  ||||||||||  | |||||||| ||||||||||| ||||      
T  13937817 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 13937718  T
Q  137 aatttggcaa 146  Q
    ||||||||||    
T  13937717 aatttggcaa 13937708  T

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Target: scaffold0472 (Bit Score: 97; Significance: 3e-47; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 3390 - 3186
Alignment:
Q  16 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 115  Q
    ||||||| ||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||||||| ||||| ||||||||||||||| ||||| ||||     
T  3390 gacatcacaggagcaaccctagttacaccataatatggagttaatttggcataaacaggttcctcttaaagtttctatccttgcttggagacttttgaga 3291  T
Q  116 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 215  Q
    |||||||||||||| |||   ||||||||||| | ||||||| ||  | |||||| |||||| |||||||||||||||||||  || |||||||||  ||    
T  3290 gatcggttacctacgaaaagcaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatc 3191  T
Q  216 atttg 220  Q
    |||||    
T  3190 atttg 3186  T

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