View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6874A_high_19 (Length: 312)

Name: NF6874A_high_19
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6874A_high_19
NF6874A_high_19
[»] chr2 (2 HSPs)
chr2 (6-176)||(16384801-16384969)
chr2 (183-311)||(16385119-16385247)
[»] chr4 (1 HSPs)
chr4 (159-242)||(8321554-8321636)
[»] chr1 (3 HSPs)
chr1 (108-213)||(26330435-26330541)
chr1 (162-234)||(17622013-17622085)
chr1 (163-240)||(26645958-26646035)
[»] scaffold0021 (1 HSPs)
scaffold0021 (137-240)||(156500-156604)
[»] chr3 (1 HSPs)
chr3 (131-235)||(21806652-21806757)
[»] chr7 (1 HSPs)
chr7 (101-188)||(5487433-5487520)
[»] chr5 (1 HSPs)
chr5 (166-240)||(33699845-33699919)


Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 6 - 176
Target Start/End: Original strand, 16384801 - 16384969
Alignment:
Q  6 catagacagaaagtgcacaaacatgtaccaccaacacaatctagtaagccagtgtacgaaatcgaaacctaaaaattgtgagacatttttcaaattggtt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||| ||||||||||| ||||||    
T  16384801 catagacagaaagtgcacaaacatgtaccaccaacacaatctagtaagccagt--acgaaatcgaaacctacaaattgtgacacatttttcaacttggtt 16384898  T
Q  106 ctttgagataccctctcaacctctacactcttttctcttcttttattggtctattgaccatacaagttttg 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  16384899 ctttgagataccctctcaacctctacactcttttctcttcttttattgctctattaaccatacaagttttg 16384969  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 183 - 311
Target Start/End: Original strand, 16385119 - 16385247
Alignment:
Q  183 ctcttcggactttagctatcacacaatccacttttataacctaaagatgattaatgaaacatagaaagtgaaaatccagccatcaacacttacattagat 282  Q
    ||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||  | |||||| || | |||||    
T  16385119 ctcttcggactttagttatcacacaatctacttttataacctaacgatgattaatgaaacatagaaagcgaaaatccagaaagcaacacataaaatagat 16385218  T
Q  283 cgtgaaacaacaagattagaagacatact 311  Q
    |||||| ||||| ||||| ||| ||||||    
T  16385219 cgtgaatcaacacgattataagccatact 16385247  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 242
Target Start/End: Original strand, 8321554 - 8321636
Alignment:
Q  159 ttgaccatacaagttttggaaagcctcttcggactttagctatcacacaatccacttttataacctaaagatgattaatgaaac 242  Q
    |||||| ||||||||||||| | ||||||  |||||||||||||| ||||||||| ||||| |||||||||| |||||||||||    
T  8321554 ttgaccttacaagttttggacaacctctttagactttagctatcatacaatccacctttat-acctaaagataattaatgaaac 8321636  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 26330435 - 26330541
Alignment:
Q  108 ttgagataccctctcaacctctacactcttttctcttcttttattggtcta-ttgaccatacaagttttggaaagcctcttcggactttagctatcacac 206  Q
    |||||||||||||||||   |||||||||| ||||||||||| | ||| || |||| | ||||||||||||| | ||||||| ||||||| | | |||||    
T  26330435 ttgagataccctctcaaatactacactcttctctcttcttttctcggtttatttgatcttacaagttttggacaacctcttcagactttaacaaccacac 26330534  T
Q  207 aatccac 213  Q
    |||||||    
T  26330535 aatccac 26330541  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 17622085 - 17622013
Alignment:
Q  162 accatacaagttttggaaagcctcttcggactttagctatcacacaatccacttttataacctaaagatgatt 234  Q
    |||||||||||||||   ||||| |||||||||||| || |||||||||||| |||||| | |||||| ||||    
T  17622085 accatacaagttttgagcagccttttcggactttagttaccacacaatccacctttatagcataaagaggatt 17622013  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 26646035 - 26645958
Alignment:
Q  163 ccatacaagttttggaaagcctcttcggactttagctatcacacaatccacttttataacctaaagatgattaatgaa 240  Q
    ||||||||||||| || |  |||||| ||||||| ||| |||||||||||| ||||||||  ||||| ||||| ||||    
T  26646035 ccatacaagttttagacatgctcttcagactttaactaccacacaatccacctttataactcaaagaagattagtgaa 26645958  T

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Target: scaffold0021 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 156604 - 156500
Alignment:
Q  137 tttctcttcttttattggtcta-ttgaccatacaagttttggaaagcctcttcggacttta-gctatcacacaatccacttttataacctaaagatgatt 234  Q
    ||||||||||||| | |||||| || |||||| |||||||||| ||||| ||| ||||||| |||| || |||||| || ||||||||||||| | ||||    
T  156604 tttctcttcttttct-ggtctacttaaccatataagttttggacagcctattcagactttaagctaccatacaatcaacctttataacctaaaaaggatt 156506  T
Q  235 aatgaa 240  Q
    ||||||    
T  156505 aatgaa 156500  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 235
Target Start/End: Complemental strand, 21806757 - 21806652
Alignment:
Q  131 cactcttttctcttcttttattggtcta-ttgaccatacaagttttggaaagcctcttcggactttagctatcacacaatccacttttataacctaaaga 229  Q
    |||| ||||||||||||||  ||||| | ||  ||| |||||||||||| || ||||||  |||||||||| ||||| |||||| |||||| ||||||||    
T  21806757 cactattttctcttctttttatggtccactttgccacacaagttttggacagtctcttcaaactttagctaccacacgatccacctttataccctaaaga 21806658  T
Q  230 tgatta 235  Q
     |||||    
T  21806657 agatta 21806652  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 5487520 - 5487433
Alignment:
Q  101 tggttctttgagataccctctcaacctctacactcttttctcttcttttattggtcta-ttgaccatacaagttttggaaagcctcttc 188  Q
    |||| ||||||||||||| |||||| ||| |||| |||||||||||||| |||| ||| ||||| |||| ||||||||| | |||||||    
T  5487520 tggtgctttgagatacccactcaacttctgcact-ttttctcttcttttcttggcctacttgacaatacgagttttggacaacctcttc 5487433  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 33699845 - 33699919
Alignment:
Q  166 tacaagttttggaaagcctcttcggactttagctatcacacaatccacttttataacctaaagatgattaatgaa 240  Q
    ||||| ||||||  ||||||||| ||||||||||   ||||||||||| |||||| |||||||| ||||| ||||    
T  33699845 tacaaattttgggcagcctcttcagactttagctgctacacaatccacctttataccctaaagaggattagtgaa 33699919  T

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