View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_high_5 (Length: 499)
Name: NF6874A_high_5
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 54 - 490
Target Start/End: Original strand, 16691234 - 16691670
Alignment:
| Q |
54 |
tttacgaactttttcatgaattaaaatcagaaatcatgacacacgcgcgagcgtgcagagataaagagagcataccccaaaacatacatatccggctcat |
153 |
Q |
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| T |
16691234 |
tttacgaactttttcatgaattaaaatcaaaaatcatgacacacacgcgagcgtgcagagataaagagagcataccccaaaacatacatatccggctcat |
16691333 |
T |
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| Q |
154 |
ttcgaacctgaagaaaatcactcagatcaaggttcccacttgggcattgacctccaacgttccatgttgcagcgaaaacactatgattcaaagcacaggc |
253 |
Q |
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| T |
16691334 |
ttcgaacctgaagaaaatcactcagatcaaggttcccacttgggcattgacctccaacgttccatgttgcagcgaaaacactatgattcaaagcacaggc |
16691433 |
T |
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| Q |
254 |
aaataactattatagttaatatagtcacagatattttaacagcatcaagttataaagaaaatcttttaattacttgaaattctgaactgcttcacaagaa |
353 |
Q |
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| T |
16691434 |
aaataactattatagttaatattgtcacagatattttaacagcatgaagttataaagaaaatcttttaattacttgaaattctgaactgcttcacaagaa |
16691533 |
T |
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| Q |
354 |
gacatggaaggtactgagccttgattttggatggatgtatcagaaatttcttctgcaagaaagaaaatgaaagaggaactattttataatgaaaagagtg |
453 |
Q |
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| T |
16691534 |
gacatggaaggtactgagccttgattttggatggatggatcagaaatttcttctgcaagaaagaaaatgaaagaggaactattttataatgaaaagagtg |
16691633 |
T |
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| Q |
454 |
gctgaaaaatgtgcagtataaggtttattatattctt |
490 |
Q |
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| T |
16691634 |
gttgaaaaatgtgtagtataaggtttattctattctt |
16691670 |
T |
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