View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_high_6 (Length: 438)
Name: NF6874A_high_6
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 7 - 431
Target Start/End: Original strand, 27096426 - 27096850
Alignment:
| Q |
7 |
aattgttatggtcttggcctcttgggtgtgtggtgcagttagttgtatatgttttgtggggagtttcacattgaaattggcattaggtaaccatgtgatc |
106 |
Q |
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| T |
27096426 |
aattgttatggtcttggcctcttgggtgtgtggtgcagttagttgtatatgttttgtggggagtttcacattgaaattggcattaggtaaccatgtgatc |
27096525 |
T |
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| Q |
107 |
ctatgtaatcttgttccactttcgtttttgtgaaatttttgcgtgttaagtagtctaatagttaaaaattcacctttaaaataaataagtgaaaaatctg |
206 |
Q |
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| T |
27096526 |
ctatgtaatcttgttccactttcgtttttgtgaaatttttgcgtgttaagtagtctaatagttaaaaattcacctttaaaataaataagtgaaaaatctg |
27096625 |
T |
|
| Q |
207 |
gagttcaaactctaacgtaatgaatgatcctatttataatcttgttccatcttctcttttatgcatacctcataccgggtgaaatctgtcgatatatttt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
27096626 |
gagttcaaactctaacgtaatgaatgatcctatttataatcttattccatcttctcttttgtgcatacctcataccgggtgaaatgtgtcgatatatttt |
27096725 |
T |
|
| Q |
307 |
tagtcttttnnnnnnnnnngtccttttattaaaagcaatcaccttcgaaactaaatgtggacatctattttaatagagatttgaaaaacgattctatatt |
406 |
Q |
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| T |
27096726 |
tagtcttttaaaaaaaaaagtccttttattaaaagcaatcaccttcgaaactaaatgtggacatctattttaatagagatttgaaaaacgattctatatt |
27096825 |
T |
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| Q |
407 |
atgaaagaatttgatccactcattg |
431 |
Q |
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| T |
27096826 |
atgaaagaattagatccactcattg |
27096850 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 4930484 - 4930532
Alignment:
| Q |
170 |
aaaaattcacctttaaaataaataagtgaaaaatctggagttcaaactc |
218 |
Q |
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| T |
4930484 |
aaaaattcacccttaaaataaataagtgaataatatgaagttcaaactc |
4930532 |
T |
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