View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_109 (Length: 266)
Name: NF6874A_low_109
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_109 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 260
Target Start/End: Complemental strand, 49007526 - 49007273
Alignment:
| Q |
7 |
tttcaagcactggtcctctgttccctgcagatgtagctacaaaaatgtttttctccatagctgcaaatgtggctatagctacaggatcttcatacaaagg |
106 |
Q |
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| T |
49007526 |
tttcaagcactggtcctctgttccctgcagatgtagatacaaaaatgtttttctccatagctgcaaatgtggctatagctacaggatcttcatacaaagg |
49007427 |
T |
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| Q |
107 |
tgcctcatcaaaccccaatgataatgaaagaacatctacaccatctgatattgcactatcaattgcagctattgtatcagatgcatatgctccttctttc |
206 |
Q |
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| T |
49007426 |
tgcctcatcaaaccccaatgataatgaaagaacatctacaccatctgatattgcactatcaattgcagctattgtatcagatgcatatgctccttctttc |
49007327 |
T |
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| Q |
207 |
cacaacaccttgtacatggatacatgagcatgtggagccatgcatattcttcga |
260 |
Q |
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| T |
49007326 |
cacaacaccttgtacatggatacatgagcatgtggagccatgcctattattcga |
49007273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 189
Target Start/End: Original strand, 34963365 - 34963494
Alignment:
| Q |
60 |
tccatagctgcaaatgtggctatagctacaggatcttcatacaaaggtgcctcatcaaaccccaatgataatgaaagaacatctacaccatctgatattg |
159 |
Q |
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| T |
34963365 |
tccatagctgcaaatgttgctatagctacggcatcttcatacaaaggtacgtcattaattccaaatgataatgaaataacatcgacaccgtcggatattg |
34963464 |
T |
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| Q |
160 |
cactatcaattgcagctattgtatcagatg |
189 |
Q |
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| T |
34963465 |
cagcgtcaattgcagctattacatcagatg |
34963494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 8957476 - 8957347
Alignment:
| Q |
60 |
tccatagctgcaaatgtggctatagctacaggatcttcatacaaaggtgcctcatcaaaccccaatgataatgaaagaacatctacaccatctgatattg |
159 |
Q |
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| T |
8957476 |
tccatagctgcaaatgttgcaatggcaacaggatcgtcatacaaaggcacgtcattaataccaaatgatagtgaaagaacatcaacaccgtctgatattg |
8957377 |
T |
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| Q |
160 |
cactatcaattgcagctattgtatcagatg |
189 |
Q |
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| T |
8957376 |
ccgcgtcaattgcggctattacatcagatg |
8957347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 8962424 - 8962358
Alignment:
| Q |
123 |
aatgataatgaaagaacatctacaccatctgatattgcactatcaattgcagctattgtatcagatg |
189 |
Q |
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| T |
8962424 |
aatgatattgaaagaacatccacaccgtctgatattgcggcatcaattgcagctattgtgtcagatg |
8962358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 8946675 - 8946732
Alignment:
| Q |
132 |
gaaagaacatctacaccatctgatattgcactatcaattgcagctattgtatcagatg |
189 |
Q |
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| T |
8946675 |
gaaagaacatcaacaccgtccgatattgcagcatcaattgcagccattatatcagatg |
8946732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 189
Target Start/End: Original strand, 21687718 - 21687877
Alignment:
| Q |
30 |
cctgcagatgtagctacaaaaatgtttttctccatagctgcaaatgtggctatagctacaggatcttcatacaaaggtgcctcatcaaaccccaatgata |
129 |
Q |
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|||||||| |||| |||||||| ||| ||||||||||||||||| || || || || ||||||| ||||||| | |||||| | || | ||||| |
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| T |
21687718 |
cctgcagaagtagacacaaaaatacctttttccatagctgcaaatgtcgcaattgcaactggatctttatacaaaagaagatcatcagagccaagtgata |
21687817 |
T |
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| Q |
130 |
atgaaagaacatctacaccatctgatattgcactatcaattgcagctattgtatcagatg |
189 |
Q |
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|||||||| || ||||| || ||||||||| |||||||||||||||| ||||||||| |
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| T |
21687818 |
ttgaaagaatgtcaacaccgtcagatattgcagcatcaattgcagctattatatcagatg |
21687877 |
T |
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