View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_112 (Length: 264)
Name: NF6874A_low_112
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_112 |
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| [»] scaffold0245 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 1313677 - 1313426
Alignment:
| Q |
8 |
ttggtgttgttttaagcattgatgctaacatgatttgttcaggagagtttgtctgttagcacttcaaaagaaacacaggatagttctgcttctacaaggt |
107 |
Q |
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| T |
1313677 |
ttggtgttgttttaagcattgatgctaacatgatttgttcaggagagttcgtccgttagcacttcaaaagaaacacaggatagttctgcttctacaaggt |
1313578 |
T |
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| Q |
108 |
tgaaaaagaaggaggtaaactcttgccaggttgatctggagaagccgctagggaaatttacgggaaaaccattgtatccacccgtgggaaagtctgtgga |
207 |
Q |
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| T |
1313577 |
tgaaaaagaaggaggtaaactcttgccaggttgatctggagaagcagctagggaaatttacgggaaaaccattgtatccacccgtgggaaagtctgtgat |
1313478 |
T |
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| Q |
208 |
ggttgtggagtctgttacgaaggcaaaggttattcagagataccttggtgat |
259 |
Q |
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| T |
1313477 |
ggttgtggagtctgttacgaaggcaaaggttattcagagataccttggtgat |
1313426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 1294666 - 1294415
Alignment:
| Q |
8 |
ttggtgttgttttaagcattgatgctaacatgatttgttcaggagagtttgtctgttagcacttcaaaagaaacacaggatagttctgcttctacaaggt |
107 |
Q |
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| T |
1294666 |
ttggtgttgttttaagcattgatgttaacatggtttgttcaggagagttcgtccattagcacttcaaaagaaacacaggatagttctgcttctactaggt |
1294567 |
T |
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| Q |
108 |
tgaaaaagaaggaggtaaactcttgccaggttgatctggagaagccgctagggaaatttacgggaaaaccattgtatccacccgtgggaaagtctgtgga |
207 |
Q |
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| T |
1294566 |
cgaaaaagaaggaggtaaactcttgccaggttgatctggagaagccactagggaattttacgggaaaaccattgtatccacccgtgggaaagtctgtgat |
1294467 |
T |
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| Q |
208 |
ggttgtggagtctgttacgaaggcaaaggttattcagagataccttggtgat |
259 |
Q |
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| T |
1294466 |
ggttgtggagtctgttacgaaggcgaaggttattcagagataccttggtgat |
1294415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 22576 - 22325
Alignment:
| Q |
8 |
ttggtgttgttttaagcattgatgctaacatgatttgttcaggagagtttgtctgttagcacttcaaaagaaacacaggatagttctgcttctacaaggt |
107 |
Q |
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| T |
22576 |
ttggtgttgttttaagcattgatgttaacatggtttgttcaggagagttcgtccattagcacttcaaaagaaacacaggatagttctgcttctactaggt |
22477 |
T |
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| Q |
108 |
tgaaaaagaaggaggtaaactcttgccaggttgatctggagaagccgctagggaaatttacgggaaaaccattgtatccacccgtgggaaagtctgtgga |
207 |
Q |
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| T |
22476 |
cgaaaaagaaggaggtaaactcttgccaggttgatctggagaagccactagggaattttacgggaaaaccattgtatccacccgtgggaaagtctgtgat |
22377 |
T |
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| Q |
208 |
ggttgtggagtctgttacgaaggcaaaggttattcagagataccttggtgat |
259 |
Q |
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| T |
22376 |
ggttgtggagtctgttacgaaggcaaaggttattcagagataccttggtgat |
22325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 27946993 - 27946936
Alignment:
| Q |
163 |
atttacgggaaaaccattgtatccacccgtgggaaagtctgtggaggttgtggagtct |
220 |
Q |
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| T |
27946993 |
atttacgggaaaatcactttatccaccggtgggaaaatctgtggtggttgtggagtct |
27946936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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