View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_135 (Length: 251)
Name: NF6874A_low_135
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_135 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 40688199 - 40688443
Alignment:
| Q |
7 |
tccaataatattaggttattgactatacttataatatcgatgtggaattacatgcaattttgctcatagtttggttttgatcacttgggatattggagta |
106 |
Q |
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| T |
40688199 |
tccaataatattaggttattgactatacttataatatcgatgttgaattacatgcaattttgctcatagtttggttctgatcacttgggatattggagta |
40688298 |
T |
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| Q |
107 |
acggttttaaggaagccatttgtgaatctaactgcaagactatctccaatctgatagaatctgagtgtaaggaataatcctatatacattcatccttatg |
206 |
Q |
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| T |
40688299 |
acggttttaaggaagccatttgtgaatctaactgcaagactatctccaatctgatagaatctgagtgtaaggaataatcctatatacactcatccttatg |
40688398 |
T |
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| Q |
207 |
ctcccatcattcaatatgttagatcctttatgaatgcctctaatt |
251 |
Q |
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| T |
40688399 |
ctcccatcattcaatatgttagatcctttatgaatgcctctaatt |
40688443 |
T |
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