View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_143 (Length: 250)
Name: NF6874A_low_143
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_143 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 244
Target Start/End: Complemental strand, 28529769 - 28529534
Alignment:
| Q |
15 |
catgtatgtgtcggtgcttcatag----atattgagaaattacctggagaagaatgtttaaggaatatacgaaatcattcatgcttctaagcaaaacaag |
110 |
Q |
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| T |
28529769 |
catgcatgtgtcggtgcttcatagctagatattgagaaattacctggagaagaatgtttaagaaatatacaaaatcattcatgcttctaagcaaaacaag |
28529670 |
T |
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| Q |
111 |
tgtttctgtcattctccagtcgatagcaatacaattaaagtcctgcacacaatgaatgggaaatggtgagtaaat--ttacaacnnnnnnnngtagcagg |
208 |
Q |
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| T |
28529669 |
tgtttctgtcattctccagtcaatagcaatacaattaaagtcctgcacacaatgaatgggaaatggtgagtaaattataacaacaaaagaaagtagcagg |
28529570 |
T |
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| Q |
209 |
agagtactggcattttcatattgaaatattcttcga |
244 |
Q |
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| T |
28529569 |
agagtactggcattttcatattgaaatatttttcga |
28529534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 27926707 - 27926778
Alignment:
| Q |
43 |
tgagaaattacctggagaagaatgtttaaggaatatacgaaatcattcatgcttctaagcaaaacaagtgtt |
114 |
Q |
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|||||||||||||||||||||||||| ||| ||| || | |||| | ||||||||||| | |||||||||| |
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| T |
27926707 |
tgagaaattacctggagaagaatgttcaagagatacacaatatcagttatgcttctaagtacaacaagtgtt |
27926778 |
T |
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