View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_144 (Length: 250)
Name: NF6874A_low_144
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_144 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 48993504 - 48993753
Alignment:
| Q |
1 |
gtttggaaattttggcaggtgcaatggtgccttgtgtgatgcttatactagggggtatgctagctgaaggaccaaatgaatcaacacttggaattaaaac |
100 |
Q |
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| T |
48993504 |
gtttggaaattttggcaggtgcaatggtgccttgtgtgatgcttatactagggggtatgctagctgaaggaccaaatgaatcaacacttggaattaaaac |
48993603 |
T |
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| Q |
101 |
tacaattgggataattgtggcaagacttgtggtgcttcctgttataggaattggagttgttgtgttggctgataagttgaattttttggttgaaaatgat |
200 |
Q |
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| T |
48993604 |
tacaattgggataattgtggcaagacttgtggtgcttcctgttataggaattggagttgttgtgttggctgataagttgaattttttggttgaaaatgat |
48993703 |
T |
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| Q |
201 |
gctatgtttaggtttgtgcttttgttgcaatatacaacaccaagtgctat |
250 |
Q |
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| T |
48993704 |
gctatgtttaggtttgtgcttttgttgcaatatacaacaccaagtgctat |
48993753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 22624209 - 22623977
Alignment:
| Q |
18 |
ggtgcaatggtgccttgtgtgatgcttatactagggggtatgctagctgaaggaccaaatgaatcaacacttggaattaaaactacaattgggataattg |
117 |
Q |
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| T |
22624209 |
ggtgcaatggtgccttctgtgatgcttatattagggggtatgcttgctgaaggaccaaatgagtctagacttggacttagaactactattggtattgttg |
22624110 |
T |
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| Q |
118 |
tggcaagacttgtggtgcttcctgttataggaattggagttgttgtgttggctgataagttgaattttttggttgaaaatgatgctatgtttaggtttgt |
217 |
Q |
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| T |
22624109 |
tggcaagactcttggtgctacctgttcttggtattgggattgttgctttgtcgaataagctaaatttcttggtcgaaaatgatgctatgtttagatttgt |
22624010 |
T |
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| Q |
218 |
gcttttgttgcaatatacaacaccaagtgctat |
250 |
Q |
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| T |
22624009 |
gcttttgttgcagtacacatcacctagtgctat |
22623977 |
T |
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