View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_145 (Length: 250)
Name: NF6874A_low_145
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_145 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 26930250 - 26930474
Alignment:
| Q |
12 |
atgaatgtgtcaaacatattcactgtacagttgtagcagccagagatgccccaacataattttatggtaaacccattgtgatactcgaaagattttcaaa |
111 |
Q |
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| T |
26930250 |
atgaatgtgccaaacatattctctgtacaattgtagcagccagagatgccccaacataattttatggtaaacccattgtgatactcgaaagattttcaaa |
26930349 |
T |
|
| Q |
112 |
acattcaatgttgccctcaaaagattgttatataaatttggtccaatgatattttaacaaaagttactgcttacagcgacaaaattgatgttatgtaaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
26930350 |
acattcaatgttgccctcaaaagattgttatataaatttggtccaatgatattttaacaaaagttactgcttacagcggcaaaattgatgttatgtcaaa |
26930449 |
T |
|
| Q |
212 |
aatcatccttgttatatttcaaagg |
236 |
Q |
| |
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|||||||||||||||||||| |||| |
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| T |
26930450 |
aatcatccttgttatatttccaagg |
26930474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 63 - 225
Target Start/End: Original strand, 26963226 - 26963389
Alignment:
| Q |
63 |
caacataattttatggtaaaccc-attgtgatactcgaaagattttcaaaacattcaatgttgccctcaaaagattgttatataaatttggtccaatgat |
161 |
Q |
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||||||||||||||| ||||||| ||| | |||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| |
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| T |
26963226 |
caacataattttatgataaaccccatttttatactcgaaatattttcaaaacattcaatgtggccttcaaaagattgttatataaattcggtccaatgat |
26963325 |
T |
|
| Q |
162 |
attttaacaaaagttactgcttacagcgacaaaattgatgttatgtaaaaaatcatccttgtta |
225 |
Q |
| |
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| T |
26963326 |
attttaacaaaagttactgcgtatagcggcaaaattgatgtcatgtcaaaaatcatcctagtta |
26963389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 26940843 - 26940672
Alignment:
| Q |
46 |
agcagccagagatgccccaacataattttatggtaaaccc-attgtgatactcgaaagattttcaaaacattcaatgttgccctcaaaagattgttatat |
144 |
Q |
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|||||||| ||||||| ||||||||||||||| ||||||| ||| | |||||||||| ||| |||||| |||||||| |||||||||||||| || ||| |
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| T |
26940843 |
agcagccaaagatgccgcaacataattttatgataaaccccatttttatactcgaaatattctcaaaa--ttcaatgtggccctcaaaagatttttgtat |
26940746 |
T |
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| Q |
145 |
aaatttggtccaatgatattttaacaaaagttactgcttacagcgacaaaattgatgttatgtaaaaaatcatc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| | || | |||||||||||| |||| |||||||||| |
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| T |
26940745 |
aaatttggtccaatgatattttaacaaaagttactgcgcatagaggcaaaattgatgtcatgtcaaaaatcatc |
26940672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 35 - 208
Target Start/End: Original strand, 36673165 - 36673339
Alignment:
| Q |
35 |
tgtacagttgtagcagccagagatgccccaacataattttatggtaaaccc-attgtgatactcgaaagattttcaaaacattcaatgttgccctcaaaa |
133 |
Q |
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|||||| || ||| ||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||| |||||| | |||||||||| |
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| T |
36673165 |
tgtacaattatagaagccagagatgccccaacataattttatggtaaaccccattttgatatttgaaagattttcaaaaccttcaatctggccctcaaaa |
36673264 |
T |
|
| Q |
134 |
gattgttatataaatttggtccaatgatattttaacaaaagttactgcttacagcgacaaaattgatgttatgta |
208 |
Q |
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|||| | |||||||||||||| |||||||||||||||| || ||||||||| | | |||||||||| ||||| |
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| T |
36673265 |
gattatgatataaatttggtcggatgatattttaacaaatgtatctgcttacacaggccaaattgatgtcatgta |
36673339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 27564556 - 27564679
Alignment:
| Q |
61 |
cccaacataattttatggtaaaccc-attgtgatactcgaaagattttcaaaacattcaatgttgccctcaaaagattgttatataaatttggtccaatg |
159 |
Q |
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|||||| |||||||||| ||||||| ||| |||||||| ||||||||||| || ||||||| | |||||||| |||| |||||||||||| ||||| || |
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| T |
27564556 |
cccaacgtaattttatgataaaccccattttgatactc-aaagattttcataaaattcaatatggccctcaa--gattattatataaatttcgtccactg |
27564652 |
T |
|
| Q |
160 |
atattttaac-aaaagttactgcttac |
185 |
Q |
| |
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|||||||||| |||| ||||||||||| |
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|
| T |
27564653 |
atattttaacaaaaaattactgcttac |
27564679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 34 - 208
Target Start/End: Original strand, 29413794 - 29413968
Alignment:
| Q |
34 |
ctgtacagttgtagcagccagagatgccccaacataattttatggtaaaccc-attgtgatactcgaaagattttcaaaacattcaatgttgccctcaaa |
132 |
Q |
| |
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||||||| || ||||||| |||||||||| | |||| |||||||||||||| ||| |||||||||||||||||||||||||||||| | |||||||| |
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| T |
29413794 |
ctgtacaattatagcagc-agagatgccctactataactttatggtaaaccccatttagatactcgaaagattttcaaaacattcaatttgtccctcaaa |
29413892 |
T |
|
| Q |
133 |
agattgttatataaatttggtccaatgatattttaacaaaagttactgcttacagcgacaaaattgatgttatgta |
208 |
Q |
| |
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||||| ||| ||| | ||||||||||||||||||||||||| ||||||| ||||| | |||||||||| ||||| |
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| T |
29413893 |
agattattaaatagagttggtccaatgatattttaacaaaaattactgcatacaggggacaaattgatgtcatgta |
29413968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 24202236 - 24202133
Alignment:
| Q |
35 |
tgtacagttgtagcagccagagatgccccaacataattttatggtaaa-cccattgtgatactcgaaagattttcaaaacattcaatgttgccctcaaaa |
133 |
Q |
| |
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|||||| || |||||||||||||||||||||||| |||||| |||||| |||||| ||||||| ||||||||||||||||||| || | ||||||||| |
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| T |
24202236 |
tgtacaattctagcagccagagatgccccaacatgattttaaggtaaaccccattttgatactagaaagattttcaaaacattttatttgtccctcaaaa |
24202137 |
T |
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| Q |
134 |
gatt |
137 |
Q |
| |
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|||| |
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|
| T |
24202136 |
gatt |
24202133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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