View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_151 (Length: 249)
Name: NF6874A_low_151
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_151 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 24122227 - 24122461
Alignment:
| Q |
5 |
ctcaaggtaacttcgtcaccttgttcaactgattcacttaaatttccagcagccataggatagaaatcacagattaacctgaggtaagcaaattaggaat |
104 |
Q |
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| T |
24122227 |
ctcaaggtaacttcgtcaccttgttcaactgattcacttaaatttccagcagccataggatagaaatcacagattaacctgagataagcaaattaggaat |
24122326 |
T |
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| Q |
105 |
acatcattattaacttgtaaaatggatgctttctttgggtgtagtttttacacaatttcattttttggtcaaatagtctggtggttagaaattcacctct |
204 |
Q |
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| T |
24122327 |
acatcattattaacttgtaaaatggatgctttctttgggtgtagtttttacacaatttcattttttggtcaaatagtctggtggttagaaattcacctct |
24122426 |
T |
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| Q |
205 |
taaaatgaataactgagataaatgagatgtctatg |
239 |
Q |
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||||||||||||||||||||| ||||||||||||| |
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| T |
24122427 |
taaaatgaataactgagataagtgagatgtctatg |
24122461 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 1861486 - 1861430
Alignment:
| Q |
165 |
ttttttggtcaaatagtctggtggttagaaattcacctcttaaaatgaataactgag |
221 |
Q |
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| T |
1861486 |
tttttttgtcaagtagtcttgtggctaaaaattcacctcttaaaatgaataagtgag |
1861430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 29484975 - 29484932
Alignment:
| Q |
173 |
tcaaatagtctggtggttagaaattcacctcttaaaatgaataa |
216 |
Q |
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| T |
29484975 |
tcaaatagtctagtggctagatattcacctcttaaaatgaataa |
29484932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 24284213 - 24284261
Alignment:
| Q |
168 |
tttggtcaaatagtctggtggttagaaattcacctcttaaaatgaataa |
216 |
Q |
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|||| |||||||| || |||| |||| |||||||||||||||||||||| |
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| T |
24284213 |
tttgttcaaatagcctagtggctagacattcacctcttaaaatgaataa |
24284261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 2233224 - 2233170
Alignment:
| Q |
162 |
tcattttttggtcaaatagtctggtggttagaaattcacctcttaaaatgaataa |
216 |
Q |
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|||||||||||||||||| | | |||||| ||||||| |||||||||||||||| |
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| T |
2233224 |
tcattttttggtcaaataatttattggttaaaaattcaactcttaaaatgaataa |
2233170 |
T |
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