View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_166 (Length: 245)
Name: NF6874A_low_166
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_166 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 7177277 - 7177168
Alignment:
| Q |
16 |
aaaagagtcctatcgtaaaataattggatttatgctcctagtatgtaacaaaagactcgatttatatattgcattattacaccccattctctgcaagcaa |
115 |
Q |
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| T |
7177277 |
aaaagagtcatatcataaaataattggctttatgctcctagtatgtaacaaaagactcgatttatatattgcattattacaccccattctctgcaagcaa |
7177178 |
T |
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| Q |
116 |
taacaatgca |
125 |
Q |
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| T |
7177177 |
taacaatgca |
7177168 |
T |
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Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 7177115 - 7177045
Alignment:
| Q |
175 |
gtcagcaacatctccatcatcctaggacaacaaccttacattggtttagcaacaaatgcatgtccacgaaa |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7177115 |
gtcagcaacatctccatcatcctaggacaacaaccttatattggtttagcaacaaatgcatgtccacgaaa |
7177045 |
T |
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