View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_171 (Length: 243)
Name: NF6874A_low_171
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_171 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 26 - 227
Target Start/End: Original strand, 37430382 - 37430583
Alignment:
| Q |
26 |
aatgtataggaagtaaaatgagtaagcagcatcaacnnnnnnnggtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagaggaaattat |
125 |
Q |
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| T |
37430382 |
aatgtataggaagtaaaaagagttagcagcatcaacaagaacaagtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagaggaaactat |
37430481 |
T |
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| Q |
126 |
actctcttgtttaggattttggatttgattattttagcctatatctatagaggttatgaagaggtttgaaagatgcagaagcatgacctacaaagcattg |
225 |
Q |
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| T |
37430482 |
actctcttcttgaggattttttatttgattattttagcctctatctatagatgttatgaagaggtttgaaagatgcagaagcatgacctactaagcattg |
37430581 |
T |
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| Q |
226 |
at |
227 |
Q |
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|| |
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| T |
37430582 |
at |
37430583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 37698424 - 37698509
Alignment:
| Q |
32 |
taggaagtaaaatgagtaagcagcatcaacnnnnnnnggtgaaaggcaagataaggaaatagaaaacaaaaggaccccatttagag |
117 |
Q |
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|||||||||||||||||||||| || |||| ||||||||||| |||||| ||||||| | ||||||||||||||||||| |
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| T |
37698424 |
taggaagtaaaatgagtaagcaacaacaacaagaaaaagtgaaaggcaaaataaggcaatagaataaaaaaggaccccatttagag |
37698509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 37441567 - 37441599
Alignment:
| Q |
24 |
agaatgtataggaagtaaaatgagtaagcagca |
56 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
37441567 |
agaaagtataggaagtaaaatgagtaagcagca |
37441599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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