View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_172 (Length: 243)
Name: NF6874A_low_172
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_172 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 8946991 - 8947195
Alignment:
| Q |
20 |
tgcaaaatgatgaattgttggtatttgcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcactttc |
119 |
Q |
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| T |
8946991 |
tgcaaaatgatgaattgttgctattttcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcactctc |
8947090 |
T |
|
| Q |
120 |
gggccaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8947091 |
gggccaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggt |
8947190 |
T |
|
| Q |
220 |
gagtg |
224 |
Q |
| |
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||||| |
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| T |
8947191 |
gagtg |
8947195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 8973504 - 8973299
Alignment:
| Q |
20 |
tgcaaaatgatgaattgttggtatttgcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcactttc |
119 |
Q |
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||||||| |||||||||||||||||| ||||||||||||| | |||||||||||||||||| |||| || ||| ||||||| || |||||||||||||| |
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| T |
8973504 |
tgcaaaaagatgaattgttggtattttcaaattgacataattgccctttccattttgaaggaatttgaggcatgtcattatctttgaaactttcactttc |
8973405 |
T |
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| Q |
120 |
gggccaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggt |
219 |
Q |
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| T |
8973404 |
tggccaaacaccggtatcaatcataccaacaatgacatctttgccataatcagaagctggccatgcccctttgtatgaattaaggccaaggaattgtggt |
8973305 |
T |
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| Q |
220 |
gagtga |
225 |
Q |
| |
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|||||| |
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| T |
8973304 |
gagtga |
8973299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 8962102 - 8961899
Alignment:
| Q |
20 |
tgcaaaatgatgaattgttggtatttgcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcactttc |
119 |
Q |
| |
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||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||| | |||||||||||| |||||||||||||| |
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| T |
8962102 |
tgcaaaaagatgaattgttggtattttcaaattgacataatttccctttccattttgaaggaattttagtaaatccattatcattgaaactttcactttc |
8962003 |
T |
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| Q |
120 |
gggccaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggt |
219 |
Q |
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| T |
8962002 |
tggccaaacaccggtatcaatcacaccaacaatgacatcttttccataatcagaagctagccacacccctttgtagggattaagaccaaggaattgaggt |
8961903 |
T |
|
| Q |
220 |
gagt |
223 |
Q |
| |
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|||| |
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|
| T |
8961902 |
gagt |
8961899 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 47 - 224
Target Start/End: Original strand, 21688169 - 21688346
Alignment:
| Q |
47 |
caaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgagtcaatcaaacc |
146 |
Q |
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||||||||||||| | |||||||||||||| || |||||||||||||||| ||| |||||||||||||||| ||||||||||| | ||| || | ||| |
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| T |
21688169 |
caaattgacataattggcctttccattttgagggtattttagtcattccatcatctctaaaactttcactttctggccaaacaccagtgtctattacacc |
21688268 |
T |
|
| Q |
147 |
aataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtgagtg |
224 |
Q |
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|| ||||| ||||| |||||| | ||||| ||||||||||||| | ||||||| |||||||| ||||| |||||||| |
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| T |
21688269 |
aacaatgatatctttaccaaaatcagaagttggccatgcccctctatatggattaaggccaagaaattgaggtgagtg |
21688346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 34963779 - 34963857
Alignment:
| Q |
64 |
cctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgagtcaatca |
142 |
Q |
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||||||||||||||||| |||||||||||||||| ||| || || || |||||||| |||||||| |||| |||||||| |
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| T |
34963779 |
cctttccattttgaaggaattttagtcattccatcatctttgaagctctcactttctggccaaactcctgtgtcaatca |
34963857 |
T |
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