View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_175 (Length: 243)
Name: NF6874A_low_175
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_175 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 14783 - 14573
Alignment:
| Q |
14 |
ttctacaatagtgctataaatcactaaaacaaacaatcaacaatgaatatcaaaataacatgaacaacttataatttaaactacactatattgactttga |
113 |
Q |
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| T |
14783 |
ttctacaatagtgctataaataactaaaacaaacaatcaacaatgaatatcaaaataacatgaacaacttataatttaaactacactatattgactttga |
14684 |
T |
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| Q |
114 |
aacaccaattcaaatcaatcttaccacgacactgggacataaaattttcttaatcagctttgagtctccacccatatgcagcacgttccatattcttcta |
213 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14683 |
aacaccaattcaaatcaatcttaccacaacactgggacataaaattttcttaatcagctttgactctccacccatatgcagcacgttccatattcttcta |
14584 |
T |
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| Q |
214 |
ttaggtgttat |
224 |
Q |
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||||||||||| |
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| T |
14583 |
ttaggtgttat |
14573 |
T |
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