View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6874A_low_184 (Length: 241)

Name: NF6874A_low_184
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6874A_low_184
NF6874A_low_184
[»] chr6 (10 HSPs)
chr6 (21-229)||(26975517-26975725)
chr6 (25-229)||(26636212-26636416)
chr6 (25-229)||(26742178-26742382)
chr6 (21-229)||(26950309-26950517)
chr6 (21-217)||(26959704-26959900)
chr6 (21-205)||(27664613-27664797)
chr6 (21-220)||(26849287-26849486)
chr6 (24-229)||(25074436-25074638)
chr6 (114-220)||(31288880-31288986)
chr6 (21-77)||(31288986-31289042)
[»] chr2 (1 HSPs)
chr2 (24-229)||(17992626-17992831)


Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 26975725 - 26975517
Alignment:
Q  21 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||    
T  26975725 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagtagtgagttcacttttaatattcgag 26975626  T
Q  121 atttgagtccaactaggtaatcggcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc 220  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26975625 atttgagtccaacaaggtaatcagcaacatgtaaaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcatattc 26975526  T
Q  221 ttctctgtc 229  Q
     | ||||||    
T  26975525 atttctgtc 26975517  T

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Target: chr6; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 26636416 - 26636212
Alignment:
Q  25 ttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt 124  Q
    ||||||| ||||||||  | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26636416 ttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt 26636317  T
Q  125 gagtccaactaggtaatcggcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattcttct 224  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |    
T  26636316 gagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcatattcattt 26636217  T
Q  225 ctgtc 229  Q
    |||||    
T  26636216 ctgtc 26636212  T

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Target: chr6; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 26742382 - 26742178
Alignment:
Q  25 ttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt 124  Q
    ||||||| ||||||||  | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26742382 ttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt 26742283  T
Q  125 gagtccaactaggtaatcggcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattcttct 224  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |    
T  26742282 gagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcatattcattt 26742183  T
Q  225 ctgtc 229  Q
    |||||    
T  26742182 ctgtc 26742178  T

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Target: chr6; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 26950517 - 26950309
Alignment:
Q  21 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 120  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||  | || ||||| |||  |||||| |||||||||||||||||||    
T  26950517 agtgttgtctttcccattcccccagttccaaggattcctatcatgcagactccatcgtttgatcccaactctgaaagtgaattcacttctgatattcgag 26950418  T
Q  121 atttgagtccaactaggtaatcggcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc 220  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950417 atttgagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc 26950318  T
Q  221 ttctctgtc 229  Q
     | ||||||    
T  26950317 atttctgtc 26950309  T

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Target: chr6; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 26959900 - 26959704
Alignment:
Q  21 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 120  Q
    ||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||||  | || ||||| |||  |||||| ||||||| |||||||||||    
T  26959900 agtgttgtctttcccattcctccagttccaaggattcctatcatgcagactccatcgtttgatcccaactctgaaagtgaattcacttttgatattcgag 26959801  T
Q  121 atttgagtccaactaggtaatcggcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcata 217  Q
    ||||||| ||||| |||||||| |||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  26959800 atttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacgtctgtaactattttttcaataaaatcacgttcata 26959704  T

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Target: chr6; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 27664613 - 27664797
Alignment:
Q  21 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 120  Q
    ||||||||||||||||  || |||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||| |||||||||||||||||||    
T  27664613 agtgttgtcttacccagacctccagttccaaggattcctattatgtagactccatcggtacatcccaagtctagaagtgaattcacttctgatattcgag 27664712  T
Q  121 atttgagtccaactaggtaatcggcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaa 205  Q
    ||| ||||||||| ||||| || |||||||||| | ||    |||||||||||| |||||||||||||||||||| |||||||||    
T  27664713 attcgagtccaacaaggtactcagcaacatgtaaatgacaacggttgatcttgttggagacgtctgtaactatttcttcaataaa 27664797  T

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Target: chr6; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 26849486 - 26849287
Alignment:
Q  21 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag 120  Q
    |||||||| || |||||||| ||||||||||||||||||||| |  ||||||||||| ||||  |||| ||||||||||| |||||||||||||||||||    
T  26849486 agtgttgtttttcccattcctccagttccaaggattcctattttccagactccatcattagattccaattctagaagtgaattcacttctgatattcgag 26849387  T
Q  121 atttgagtccaactaggtaatcggcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc 220  Q
    |||| |||||||| |||||||| |||||||| | |||||| ||||||||||||| |||||| ||  ||||||||||  ||||||||| | ||||||||||    
T  26849386 atttaagtccaacaaggtaatcagcaacatgcaaaggaacatggttgatcttgttggagacatccttaactattttcccaataaaatggtgttcatattc 26849287  T

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Target: chr6; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 25074638 - 25074436
Alignment:
Q  24 gttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatt 123  Q
    |||||||| |||||||| |||||||||| ||||||||||||| | |||||||   || | ||||||||||||||||| ||||||||||| |||||||||     
T  25074638 gttgtcttgcccattccaccagttccaacgattcctattatgcatactccat---tatatcccaagtctagaagtgaattcacttctgaaattcgagatc 25074542  T
Q  124 tgagtccaactaggtaatcggcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattcttc 223  Q
      || ||||| |||||||| | |||||||| |||||  ||||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |     
T  25074541 gaagaccaacaaggtaatcagtaacatgtaaaggaatttggttaatcttgttggagacgtctctaactattttttcaataaaatcacgttcatattcatt 25074442  T
Q  224 tctgtc 229  Q
    ||||||    
T  25074441 tctgtc 25074436  T

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Target: chr6; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 31288986 - 31288880
Alignment:
Q  114 attcgagatttgagtccaactaggtaatcggcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgtt 213  Q
    |||||||||||||| ||||| |||||||| |||||||||| |||||| ||||| ||||||| |||||| |||||||||||||||||||||||||| ||||    
T  31288986 attcgagatttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacatctgtaactattttttcaataaaatctcgtt 31288887  T
Q  214 catattc 220  Q
    |||||||    
T  31288886 catattc 31288880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 31289042 - 31288986
Alignment:
Q  21 agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatca 77  Q
    |||||||| |||||| |||| ||||||||||| |||||||||||| |||||||||||    
T  31289042 agtgttgttttaccccttcctccagttccaagtattcctattatgcagactccatca 31288986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 17992626 - 17992831
Alignment:
Q  24 gttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatt 123  Q
    |||||||| |||||||| ||||| |||||||||||||||||| |||| |||||| || |  |||||||||||||||| ||||||||||||||||||||||    
T  17992626 gttgtcttgcccattccaccagtaccaaggattcctattatgcagacaccatcattatattccaagtctagaagtgaattcacttctgatattcgagatt 17992725  T
Q  124 tgagtccaactaggtaatcggcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattcttc 223  Q
    |||| ||||  |||||||||||||||||||  ||||||||||| ||||||| |||   ||||||||||||||||||||||||||| ||||||||||| |     
T  17992726 tgagaccaataaggtaatcggcaacatgtaatggaacgtggttaatcttgttggaagtgtctgtaactattttttcaataaaatcacgttcatattcatt 17992825  T
Q  224 tctgtc 229  Q
    ||||||    
T  17992826 tctgtc 17992831  T

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