View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_186 (Length: 240)
Name: NF6874A_low_186
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_186 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 42959789 - 42960003
Alignment:
| Q |
22 |
aacacttacatatatgtgtttgaaagggcttatcaaaatatattataacatgtttataaattgttttcagcttatttcgttaaactg------------a |
109 |
Q |
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| T |
42959789 |
aacacttacatatatgtgtttgaaagggcttatcaaaatatattataacatgtttataaactgttttcagcttatttcgttaaactgttcatgaaacgga |
42959888 |
T |
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| Q |
110 |
gttatcagtaagccctatacatacctgtccatcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaa |
209 |
Q |
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| T |
42959889 |
gttatcagtaagccctatacatacctgcccatcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaa |
42959988 |
T |
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| Q |
210 |
ggctgttaacaccaa |
224 |
Q |
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| T |
42959989 |
gtctgttaacaccaa |
42960003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 11707142 - 11707094
Alignment:
| Q |
50 |
cttatcaaaatatattataacatgtttataaattgttttcagcttattt |
98 |
Q |
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| T |
11707142 |
cttatcaaaatagattatgacatgtttataagttgttttcagcttattt |
11707094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 35608160 - 35608112
Alignment:
| Q |
122 |
ccctatacatacctgtccatcatcatgacagtagcttgaggatttgttc |
170 |
Q |
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| T |
35608160 |
ccctgtacatgcctgcccatcatcatgacagtagcttgagaattggttc |
35608112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 5504827 - 5504758
Alignment:
| Q |
129 |
catacctgtccatcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatc |
198 |
Q |
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| T |
5504827 |
cataccttcccatcatcatcacagtggcttgaggatttgttcctggtgattcagtaaacgttgaaccatc |
5504758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 99
Target Start/End: Complemental strand, 35064923 - 35064893
Alignment:
| Q |
69 |
acatgtttataaattgttttcagcttatttc |
99 |
Q |
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| T |
35064923 |
acatgtttataaattgttttcagcttatttc |
35064893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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