View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_188 (Length: 238)
Name: NF6874A_low_188
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_188 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 3036378 - 3036598
Alignment:
| Q |
18 |
gacatcacaaggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaa |
117 |
Q |
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| T |
3036378 |
gacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaa |
3036477 |
T |
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| Q |
118 |
tctaatgatgtgactgcattcttcatcgatgaacttcagagtaggttacttgttcaagaaggacgcataaaatctcagaataaagaaattgatattgaga |
217 |
Q |
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| T |
3036478 |
tctaatgatgtgactgcactcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagc |
3036577 |
T |
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| Q |
218 |
aagctttgaaggattcaaatg |
238 |
Q |
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| T |
3036578 |
aagctttgaaggtttcgaatg |
3036598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 28 - 238
Target Start/End: Original strand, 20528759 - 20528969
Alignment:
| Q |
28 |
ggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaatgatg |
127 |
Q |
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|||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
20528759 |
ggtgaaaagatggatcaaactctgcttgttgaaaagatcttgagatctttaacaagcaagttcaattatgtggtgtgatctattgaagaatccaatgatg |
20528858 |
T |
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| Q |
128 |
tgactgcattcttcatcgatgaacttcagagtaggttacttgttcaagaaggacgcataaaatctcagaataaagaaattgatattgagaaagctttgaa |
227 |
Q |
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| T |
20528859 |
tgacaacactttccattaatgaattacatagtagtttacttgttcaagaacaacgcatgaaatctcaaaaccaagaaactgatactgagcaagctttgaa |
20528958 |
T |
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| Q |
228 |
ggattcaaatg |
238 |
Q |
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| T |
20528959 |
ggtttctaatg |
20528969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 16863125 - 16863336
Alignment:
| Q |
18 |
gacatcacaaggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaa |
117 |
Q |
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|||| |||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||| ||| ||||||| ||| | ||| |
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| T |
16863125 |
gacaacacatggtgagaagatggatcaaacacttgttgttgaaaagattctgagatctttaacaagtaaatttaattacgtgctgtgctcaattcatgaa |
16863224 |
T |
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| Q |
118 |
tctaatgatgtgactgcattcttcatcgatgaacttcagagtaggttacttgttcaagaaggacgcataaaatctcagaataaagaaattgatattgaga |
217 |
Q |
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| T |
16863225 |
tcaaatgatgtaactacactctcaattaatgaacttcatagcagtttacttgttcaagaacaacgcatgaaaactcaaaatcaagaaattgatattgaac |
16863324 |
T |
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| Q |
218 |
aagctttgaagg |
229 |
Q |
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| T |
16863325 |
aagctttgaagg |
16863336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 20542082 - 20542288
Alignment:
| Q |
23 |
cacaaggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaa |
122 |
Q |
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|||| ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| || |
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| T |
20542082 |
cacatggtgagaagatggatcaaacgctggttgttgaaaagattctgagatctttaacaagtaaattcaattatgtggtgtgttccattgaagaatcaaa |
20542181 |
T |
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| Q |
123 |
tgatgtgactgcattcttcatcgatgaacttcagagtaggttacttgttcaagaaggacgcataaaatctcagaataaagaaattgatattgagaaagct |
222 |
Q |
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||| || ||| | | | || ||||| | |||||||| ||||||||||||||| |||||| |||||||||||| |||| ||||| |||| ||||| |
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| T |
20542182 |
tgacgtcactacgctatcaattgatgagttgcagagtagtttacttgttcaagaacaacgcatgaaatctcagaatcaagactttgatgttgaacaagct |
20542281 |
T |
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| Q |
223 |
ttgaagg |
229 |
Q |
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| T |
20542282 |
ttgaagg |
20542288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 40613245 - 40613025
Alignment:
| Q |
18 |
gacatcacaaggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaa |
117 |
Q |
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|||| |||| ||||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| || ||||||||| |
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| T |
40613245 |
gacaacacatggtgagaagatggatcaaacgctggttgttgaaaagattttgagatctttaacaagtaaattcaattatgtggtgtgttccattgaagaa |
40613146 |
T |
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| Q |
118 |
tctaatgatgtgactgcattcttcatcgatgaacttcagagtaggttacttgttcaagaaggacgcataaaatctcagaataaagaaattgatattgaga |
217 |
Q |
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|| || || || ||| || | | || ||||| | |||||||| ||||||||||||||| || ||| |||||||| ||| |||| |||||| |||| |
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| T |
40613145 |
tcaaacgacgtcactacactatcaattgatgagttgcagagtagtttacttgttcaagaacaacacatgaaatctcaaaatcaagacattgatgttgaac |
40613046 |
T |
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| Q |
218 |
aagctttgaaggattcaaatg |
238 |
Q |
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| T |
40613045 |
aagctttgaaggtttccaatg |
40613025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 23940233 - 23940152
Alignment:
| Q |
50 |
tggttgttgagaagattctgagatctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaatgatgtgact |
132 |
Q |
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|||| |||||||||||| | ||||| ||| |||| |||||||||| ||||||||| || ||||||||||| |||||||||||| |
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| T |
23940233 |
tggtggttgagaagattttaagatcatta-caagcaagttcaattgtgtggtgtgttccattgaagaatcaaatgatgtgact |
23940152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 29945214 - 29945174
Alignment:
| Q |
88 |
ttcaattatgtggtgtgctctattgaagaatctaatgatgt |
128 |
Q |
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||||||||||| |||||||| ||||||||||| |||||||| |
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| T |
29945214 |
ttcaattatgttgtgtgctcaattgaagaatcaaatgatgt |
29945174 |
T |
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Back To:
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