View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6874A_low_189 (Length: 238)
Name: NF6874A_low_189
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_189 |
 | |
|
| [»] chr3 (11 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 38 - 238
Target Start/End: Complemental strand, 5484848 - 5484650
Alignment:
| Q |
38 |
ttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattttcatttccaaa |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5484848 |
ttggtttggcaacattgtggacatgagaaaacatcctgacgtaggacaagaaatttacatacggctggcatcttcagaacttggtattttcatttccaaa |
5484749 |
T |
|
| Q |
138 |
gacatattttatctcttcattcagatatattgcacaaatttatttatttcatcatttgtgtgatagaactgggaccgataccttaactgttaaattaata |
237 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||| |||||||| |
|
|
| T |
5484748 |
gacatattttatctcttcagtcagatatatagcacaaatttatttatttcatcatttgtgtgatag--ctggtactgataccttaactgtttaattaata |
5484651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 38 - 238
Target Start/End: Complemental strand, 5525892 - 5525694
Alignment:
| Q |
38 |
ttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattttcatttccaaa |
137 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| | |||| | |
|
|
| T |
5525892 |
ttggtttaacaacattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgattggcatcttcagaacttggtattttaacttcctat |
5525793 |
T |
|
| Q |
138 |
gacatattttatctcttcattcagatatattgcacaaatttatttatttcatcatttgtgtgatagaactgggaccgataccttaactgttaaattaata |
237 |
Q |
| |
|
||||||||| || |||| | |||||||| |||| |||||| |||||||||||||||||||||||||||| || | ||||||||| ||| |||||||| |
|
|
| T |
5525792 |
cacatatttttccttttcagttagatatatagcac--atttatatatttcatcatttgtgtgatagaactggcactgctaccttaacagtttaattaata |
5525695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 38 - 198
Target Start/End: Complemental strand, 5490242 - 5490083
Alignment:
| Q |
38 |
ttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattttcatttccaaa |
137 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
5490242 |
ttggtttaacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatcttcagaacttggtattttcatttcttat |
5490143 |
T |
|
| Q |
138 |
gacatattttatctcttcattcagatatattgcacaaatttatttatttcatcatttgtgt |
198 |
Q |
| |
|
||||||||| ||| |||| | |||||||| ||| ||||||| ||||||| ||||||||| |
|
|
| T |
5490142 |
tacatattttgtcttttcagttagatatatagcataaattta-atatttcaccatttgtgt |
5490083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 196
Target Start/End: Original strand, 5828185 - 5828344
Alignment:
| Q |
38 |
ttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattttcatttccaaa |
137 |
Q |
| |
|
||||||| ||| ||||||||||||||||| |||||||| ||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| |
|
|
| T |
5828185 |
ttggtttaacaatattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgactcgcatcttccgaacttggtattttcatttccaaa |
5828284 |
T |
|
| Q |
138 |
gacatattttatctcttcattcagatatattgcacaaatttatttat-ttcatcatttgt |
196 |
Q |
| |
|
||||||||||| ||||||| | |||| || | |||||||||| ||| |||| ||||||| |
|
|
| T |
5828285 |
gacatattttacctcttcagttagatgcataggacaaatttatatatattcagcatttgt |
5828344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 196
Target Start/End: Complemental strand, 5455065 - 5454907
Alignment:
| Q |
38 |
ttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattttcatttccaaa |
137 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||| || |||||||||||||||||||||||| |||||||||||||||||||||||||| |||| | |
|
|
| T |
5455065 |
ttggtttcacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatcttcagaacttggtattttcttttcttat |
5454966 |
T |
|
| Q |
138 |
gacatattttatctcttcattcagatatattgcacaaatttatttatttcatcatttgt |
196 |
Q |
| |
|
||||||||| ||| |||| | |||||||| ||| ||| |||| ||||||| ||||||| |
|
|
| T |
5454965 |
tacatattttgtcttttcagttagatatatagcataaacttatatatttcaccatttgt |
5454907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 38 - 198
Target Start/End: Complemental strand, 5503055 - 5502897
Alignment:
| Q |
38 |
ttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattttcatttccaaa |
137 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | | |
|
|
| T |
5503055 |
ttggtttgacaacattgtcgacatgagaaaacatccagaccaaggacaagacatttacatacggctggcatcttcagagcttggtattttcatttgctat |
5502956 |
T |
|
| Q |
138 |
gacatattttatctcttcattcagatatattgcacaaatttatttatttcatcatttgtgt |
198 |
Q |
| |
|
||||||||| || |||| | ||||||| ||| ||||||| ||||||| ||||||||| |
|
|
| T |
5502955 |
tacatattttgtcctttcagttagatata--gcataaatttacatatttcaccatttgtgt |
5502897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 198
Target Start/End: Complemental strand, 5446505 - 5446346
Alignment:
| Q |
39 |
tggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattttcatttccaaag |
138 |
Q |
| |
|
||||||| | ||||||| |||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5446505 |
tggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattttcatttgttatt |
5446406 |
T |
|
| Q |
139 |
acatattttatctcttcattcagatatattgcacaaatttatttatttcatcatttgtgt |
198 |
Q |
| |
|
||||||||| || |||| | |||||||| ||| ||||||| ||||||| ||||||||| |
|
|
| T |
5446405 |
acatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt |
5446346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 38 - 194
Target Start/End: Complemental strand, 20343685 - 20343528
Alignment:
| Q |
38 |
ttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattttcatttccaaa |
137 |
Q |
| |
|
|||||||| ||| ||| ||||||||||||| |||| || ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
20343685 |
ttggtttgacaatattttggacatgagaaaacatcgagaccaaggacaagacatttatatacggctagcatcttcagaacttggtattttcatttcctat |
20343586 |
T |
|
| Q |
138 |
gacatattttatctcttcattcagatatattgcacaaattt-atttatttcatcattt |
194 |
Q |
| |
|
|||| |||| || | || | ||||||||||||||||||| || ||||||| ||||| |
|
|
| T |
20343585 |
tacatctttttcctttccagttagatatattgcacaaatttcatatatttcagcattt |
20343528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 5854215 - 5854311
Alignment:
| Q |
38 |
ttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattttcatttcc |
134 |
Q |
| |
|
|||||||| ||||||||| || |||||||| ||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5854215 |
ttggtttgacaacattgttgatatgagaaaacatccagaccaaggacaagacattttcatacggctggcatcttcagaacttggtatttacatttcc |
5854311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 5848914 - 5849003
Alignment:
| Q |
38 |
ttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtatttt |
127 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
5848914 |
ttggtttaacaacattgtggacatgagaaaacatcctgacataggacaagacatttacatacgactcgcatcttcagaactcggtatttt |
5849003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 5802517 - 5802607
Alignment:
| Q |
38 |
ttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattttc |
128 |
Q |
| |
|
||||||| ||| ||| ||||||||||||| ||||| || ||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
5802517 |
ttggtttaacaatattatggacatgagaaaacatccagacgtaggacaagacatttacatacgactcgcatcttcagaacttggtattttc |
5802607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 198
Target Start/End: Original strand, 25809307 - 25809466
Alignment:
| Q |
39 |
tggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattttcatttccaaag |
138 |
Q |
| |
|
||||||| | ||||||| |||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
25809307 |
tggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattttcatttgttatt |
25809406 |
T |
|
| Q |
139 |
acatattttatctcttcattcagatatattgcacaaatttatttatttcatcatttgtgt |
198 |
Q |
| |
|
||||||||| || |||| | |||||||| ||| ||||||| ||||||| ||||||||| |
|
|
| T |
25809407 |
acatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt |
25809466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University