View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6874A_low_190 (Length: 237)
Name: NF6874A_low_190
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_190 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 38124822 - 38124647
Alignment:
| Q |
44 |
cacacaaaaacaaattcagctgtgtaagtagaaaaaagtgttttcaactgtagatcgtggaatatagcagtttgttcaaactctattaagctacagagtt |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38124822 |
cacacaaaaacaaattcagctgtgtaagtagaaaaaagtgttttcaagtgtagatcgtggaatatagcagtttgttcaaactctattaagttacagagtt |
38124723 |
T |
|
| Q |
144 |
tcatagctactatttgacatcactttgttctaaacagcgtatcacgaaccaatagcaatttatttaaattccatag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38124722 |
tcatagctactatttgacatcactttgttctaaacagcgtatcacgaaccaatagcaatttatttaaattccatag |
38124647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 13510301 - 13510345
Alignment:
| Q |
154 |
tatttgacatcactttgttctaaacagcgtatcacgaaccaatag |
198 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| ||||||| |||||| |
|
|
| T |
13510301 |
tatttgacatcactttgtactaaatagcgtttcacgaaacaatag |
13510345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University