View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_191 (Length: 237)
Name: NF6874A_low_191
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_191 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 16402112 - 16402318
Alignment:
| Q |
17 |
aggtaaagatttcgaaacagacaggcagagattcta-ggtttggaagatcagataaggttaaggactgcaaagaagtcatatgttgtaaagcctcatgga |
115 |
Q |
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| T |
16402112 |
aggtaaagttttcgaaacattcaggcagagattctaaggtttggaagatcagataaggttaaggactgcaaagaagtcatatgttgtaaagcctcatgga |
16402211 |
T |
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| Q |
116 |
aaccgttgacttctgaacagctaccaatcaccaacgtctcaagacaagttagatattgaaaacccgatgacatgttgaacttatttcacttcataatact |
215 |
Q |
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| T |
16402212 |
aaccgttgacttctgaacagctaccaatcaccaacgtctcaagacaagttagatattgaaaacccgatgacatgttgaacttattgcacttcataatatt |
16402311 |
T |
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| Q |
216 |
taacacc |
222 |
Q |
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||||||| |
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| T |
16402312 |
taacacc |
16402318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 38 - 187
Target Start/End: Original strand, 16395143 - 16395292
Alignment:
| Q |
38 |
caggcagagattctaggtttggaagatcagataaggttaaggactgcaaagaagtcatatgttgtaaagcctcatggaaaccgttgacttctgaacagct |
137 |
Q |
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| T |
16395143 |
caggcaaatattctaggtttggaagatctgacaatgttaaggatttcagagtagtcatatgttgtagagcctcatggaaaccttccacttccgaacaact |
16395242 |
T |
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| Q |
138 |
accaatcaccaacgtctcaagacaagttagatattgaaaacccgatgaca |
187 |
Q |
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| T |
16395243 |
tccaatggccaatgtctcaagacaagttagatactgaaaatcggatgaca |
16395292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 199
Target Start/End: Complemental strand, 15455066 - 15454913
Alignment:
| Q |
46 |
gattctaggtttggaagatcagataaggttaaggactgcaaagaagtcatatgttgtaaagcctcatggaaaccgttgacttctgaacagctaccaatca |
145 |
Q |
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| T |
15455066 |
gattctaggttcggaagatcagacaaagttaatgatcgcagagtagtcatatgttgtaaagccttgtgaaaaccttccacttctgaacaactgccaatag |
15454967 |
T |
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| Q |
146 |
ccaacgtctcaagacaagttagatattgaaaacccgatgacatgttgaacttat |
199 |
Q |
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| T |
15454966 |
ccaatgtcttaagacaagtcagatactgaaaacctaatgacatgttgaacttat |
15454913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 179
Target Start/End: Original strand, 17926055 - 17926203
Alignment:
| Q |
31 |
aaacagacaggcagagattctaggtttggaagatcagataaggttaaggactgcaaagaagtcatatgttgtaaagcctcatggaaaccgttgacttctg |
130 |
Q |
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| T |
17926055 |
aaacagtcaggcaaatattctagttttggaagttcagacaatattatgcattgcagagaagtcatatgttgcaaagcctcgtgcaaactttctacttccg |
17926154 |
T |
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| Q |
131 |
aacagctaccaatcaccaacgtctcaagacaagttagatattgaaaacc |
179 |
Q |
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||| ||| |||||||||| ||||| ||||||||||| ||||||||||| |
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| T |
17926155 |
gacaactagcaatcaccaatgtctctagacaagttaggtattgaaaacc |
17926203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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