View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_192 (Length: 236)
Name: NF6874A_low_192
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_192 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 236
Target Start/End: Original strand, 34142215 - 34142445
Alignment:
| Q |
6 |
tggtgttctgaaaaccacaaatatcaatatgcaaaacatgttagcaacttagcatttgatcagatggaaaataacaagcattcaaaaatcattgaactag |
105 |
Q |
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| T |
34142215 |
tggtgttctgaaaaccacaaatatcaatatgcaaaacatgttagcaacttagcatttgatcagatggaaaataacaagcattcaaaaatcattgaactag |
34142314 |
T |
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| Q |
106 |
ctctactcatttgcaaccataatcttgctaccaaaaacccagtttgtgaggcaaaatcaattaattgtataaactatataataatgtataaacaagctaa |
205 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34142315 |
ctctacgcatttgcaaccataatcttgctaccaaaaacccagtttgtgaggcaaaatcaattaattgtataaactatataataatgtataaacaagctca |
34142414 |
T |
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| Q |
206 |
acgagggacggttaatttaatcgtcattatg |
236 |
Q |
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| T |
34142415 |
aagagggacggttaatttaatagtcattatg |
34142445 |
T |
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