View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_2 (Length: 600)
Name: NF6874A_low_2
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Complemental strand, 37821843 - 37821240
Alignment:
| Q |
1 |
aatattgaagttatgtaaagattccaggacttaacaagattctatacccaaccttgtattaagcttttctatatctgtagctttaattttgcaggcaagt |
100 |
Q |
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| T |
37821843 |
aatatggaagttatgtaaagattccaggacttaacaagattctatacccaaccttgtattaagattttctatatctgtagctttaattttgcaggcaagt |
37821744 |
T |
|
| Q |
101 |
ttaaagtatttgatccggggctgcattataaaatgtgcaattgattgtgtgaagatgtcgttgatttggtgttgcatcttaacttctgtgcacttgagac |
200 |
Q |
| |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37821743 |
ttaaattatttgatctggggctgcattataaaatgtgcaattgattgtgtgaagatgtcgttgaattggtgttgcatcttaacttctgtgcacttgagac |
37821644 |
T |
|
| Q |
201 |
tgacattatgcatgttatacaacaactatctgtctgtacctagttactgcgtgtcaatttagttcagttggtgatttagcatgtgctataatactggcca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821643 |
tgacattatgcatgttatacaacaactatctgtctgtacctagttactgcgtgtcaatttagttcagttggtgatttagcatgtgctataatactggcca |
37821544 |
T |
|
| Q |
301 |
aaactggccatagtactgttctttatttgattattattttgataatgtaatgttttttaacggttgatactgtaatactattcatctcttacatatataa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821543 |
aaactggccatagtactgttctttatttgattattattttgataatgtaatgttttttaacggttgatactgtaatactattcatctcttacatatataa |
37821444 |
T |
|
| Q |
401 |
tt------------atcatacataactatagcattttattaatgatatatgttaagagcaattccaaaactcatggtaatgtgatgtgactgctggcctc |
488 |
Q |
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|| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821443 |
ttatcacaccctttatcatacataactatagcattttaataatg--atatgttaagagcaattccaaaactcatggtaatgtgatgtgactgctggcctc |
37821346 |
T |
|
| Q |
489 |
acaatttcttccgtagtactcgtatataaaagtccacttagtgggcattccactaaccactctacaaagttttaaatttttggtgtcattggtctcctat |
588 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821345 |
acaatttcttccgtagtactcgtatataaaagtccacttagtggccattccactaaccactctacaaagttttaaatttttggtgtcattggtctcctat |
37821246 |
T |
|
| Q |
589 |
catttc |
594 |
Q |
| |
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|||||| |
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| T |
37821245 |
catttc |
37821240 |
T |
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