View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_201 (Length: 233)
Name: NF6874A_low_201
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_201 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 64 - 233
Target Start/End: Original strand, 7617568 - 7617735
Alignment:
| Q |
64 |
gcaaagtgcactgtttttccatagtgtaaagccaatttcgctgccactttccggnnnnnnnnncactttaaagacagaacagaagcttataaaagcacac |
163 |
Q |
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| T |
7617568 |
gcaaagtgcactgtttttccatagtgtaaagccaatttcgctgctactttccggttttttt--cactttaaagacagaacagaagcttataaaagcacac |
7617665 |
T |
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| Q |
164 |
cctattggcttcacacattcattgaaatcacatgcatcattgatttcttatatgcagctacacataacaa |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7617666 |
cctattggcttcacacattcattgaaatcacatgcatcattgatttcttatatgcaactacacataacaa |
7617735 |
T |
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