View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_204 (Length: 232)
Name: NF6874A_low_204
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_204 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 5337691 - 5337459
Alignment:
| Q |
1 |
agaagcagaagatgatgaagaagaagcagcaggttcgtcgtttttctaattttaatattaaaatcagcgtcagcgaaaaacttgaagnnnnnnn-gttac |
99 |
Q |
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| T |
5337691 |
agaagcagaagatgatgaagaagaagcagcaggttcgtcgtttttctaattttaatattaaaatcagcgtcagcgaaaaacttgaagaaaaaaaagttac |
5337592 |
T |
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| Q |
100 |
agtaaataagctgaagtcaacgaaactaacctttcccatctgccaccgttggagtatattgattgatgaatagcagaatgtttaaacttgaagattggaa |
199 |
Q |
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| T |
5337591 |
agtaaataagctgaagtcaacgaaactaacctttcccatctgccaccgttggagtatattgattgatgaatagcagaatgtttaaacttgaagattggaa |
5337492 |
T |
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| Q |
200 |
tctgattttgaacctgaattggaataaaggatg |
232 |
Q |
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| T |
5337491 |
tctgattttgaacctgaatttgaataaaggatg |
5337459 |
T |
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