View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6874A_low_205 (Length: 232)

Name: NF6874A_low_205
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6874A_low_205
NF6874A_low_205
[»] chr1 (3 HSPs)
chr1 (20-209)||(7386424-7386613)
chr1 (50-186)||(19991215-19991350)
chr1 (103-187)||(19322649-19322733)
[»] chr5 (3 HSPs)
chr5 (74-209)||(4925268-4925403)
chr5 (50-209)||(35205787-35205946)
chr5 (69-209)||(35211204-35211344)
[»] chr3 (3 HSPs)
chr3 (50-208)||(52314493-52314651)
chr3 (50-206)||(53464903-53465059)
chr3 (85-182)||(1995809-1995906)
[»] chr4 (2 HSPs)
chr4 (53-209)||(23563558-23563714)
chr4 (81-210)||(48265287-48265416)
[»] chr2 (2 HSPs)
chr2 (115-209)||(39375510-39375604)
chr2 (20-56)||(39375627-39375663)
[»] chr8 (1 HSPs)
chr8 (94-206)||(40278492-40278604)
[»] chr7 (1 HSPs)
chr7 (87-208)||(45888823-45888944)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 7386424 - 7386613
Alignment:
Q  20 ttaattaaaagaaataaaactcaaagtattacaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaa 119  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7386424 ttaattaaaagaaataaaactcaaagtattacaaaatctgacaattacaggaaaaggaacgtagtaatgcattgctaccatgtataatttaactactcaa 7386523  T
Q  120 ttccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttag 209  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||  | ||||||||||||||||||    
T  7386524 ttccaaagccaattatccatgatattatgacacaagagcattggttagtgtgataccacccatatggatgggcgatgtgtatgctcttag 7386613  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 50 - 186
Target Start/End: Complemental strand, 19991350 - 19991215
Alignment:
Q  50 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 149  Q
    |||||||| ||||||| | |||||||||| |||||||| ||||  ||||||| ||||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  19991350 acaaaatc-aacaattgcaggaaaaggaaggtagtaatccattattaccatggatagtttaactactcaatttcaatgccaattatccatgatcttatga 19991252  T
Q  150 cacgagagcattggttagtgtgataccacccatatgg 186  Q
    ||| | ||||||||  |||||||||||||||||||||    
T  19991251 cacaaaagcattgggcagtgtgataccacccatatgg 19991215  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 19322733 - 19322649
Alignment:
Q  103 atagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatgga 187  Q
    |||||||||||||||||||| ||||||||||||  ||||||||||||||| ||| | ||||||| ||| ||||||||||||||||    
T  19322733 atagtttaactactcaattctaaagccaattattcatgatattatgacacaagaacgttggttattgtaataccacccatatgga 19322649  T

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Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 74 - 209
Target Start/End: Original strand, 4925268 - 4925403
Alignment:
Q  74 aggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgat 173  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  4925268 aggaacgtagtaatgcattgttaccatgtatagtttaactactcaattccaaagccaattatccatgatattatgacacaagagcattggttagtgtgat 4925367  T
Q  174 accacccatatggacagacgatgtgtatgctcttag 209  Q
    ||||||||||||||||||||||| ||||||||||||    
T  4925368 accacccatatggacagacgatgcgtatgctcttag 4925403  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 35205787 - 35205946
Alignment:
Q  50 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 149  Q
    ||||||||  |||||| | |||||||||| | ||||||||||| || ||||| |||||||||| |||||||| ||| |||||||||  ||||| ||||||    
T  35205787 acaaaatcagacaattgcaggaaaaggaaggcagtaatgcattacttccatggatagtttaaccactcaatttcaatgccaattattcatgatcttatga 35205886  T
Q  150 cacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttag 209  Q
    ||| | |||||||| || ||||||||||||||||||  ||| ||||||| ||||||||||    
T  35205887 cacaaaagcattgggtaatgtgataccacccatatgtgcaggcgatgtgcatgctcttag 35205946  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 69 - 209
Target Start/End: Complemental strand, 35211344 - 35211204
Alignment:
Q  69 ggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagt 168  Q
    |||||||||| | ||||||||||| |||||||| |||||||||| |||||||| ||| |||||||||  ||||| ||||||||| | |||||||| || |    
T  35211344 ggaaaaggaaggcagtaatgcattactaccatggatagtttaaccactcaatttcaatgccaattattcatgatcttatgacacaaaagcattgggtaat 35211245  T
Q  169 gtgataccacccatatggacagacgatgtgtatgctcttag 209  Q
    |||||||||||||||||  |||  |||||| ||||||||||    
T  35211244 gtgataccacccatatgtgcaggtgatgtgcatgctcttag 35211204  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 208
Target Start/End: Original strand, 52314493 - 52314651
Alignment:
Q  50 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 149  Q
    ||||||||  |||||| | |||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||  ||||| ||||||    
T  52314493 acaaaatcagacaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattattcatgatcttatga 52314592  T
Q  150 cacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctctta 208  Q
    ||| | ||||||||  | ||||||||||||||||||  ||| ||||||| |||||||||    
T  52314593 cacaaaagcattgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctctta 52314651  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 206
Target Start/End: Original strand, 53464903 - 53465059
Alignment:
Q  50 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 149  Q
    ||||||||  |||||| | |||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||  ||||| ||||||    
T  53464903 acaaaatcagacaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattattcatgatcttatga 53465002  T
Q  150 cacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctct 206  Q
    ||| | ||||||||  | ||||||||||||||||||  ||| ||||||| |||||||    
T  53465003 cacaaaagcattgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctct 53465059  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 182
Target Start/End: Original strand, 1995809 - 1995906
Alignment:
Q  85 aatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccat 182  Q
    ||||||||||||| |||  | ||||| |||||||  ||||| |||||||||| | ||||||||||| | || ||||| || |||||  ||||||||||    
T  1995809 aatgcattgctactatggttggtttagctactcatatccaatgccaattatccaagatattatgactcaagtgcattagtcagtgtattaccacccat 1995906  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 209
Target Start/End: Original strand, 23563558 - 23563714
Alignment:
Q  53 aaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacac 152  Q
    |||||| |||||| | |||||||||| ||||||||||||| | |||||| ||||||||||||||||||| ||| | |||||||| ||||| |||||||||    
T  23563558 aaatctgacaattgcaggaaaaggaaggtagtaatgcattaccaccatggatagtttaactactcaatttcaatgtcaattatccatgatcttatgacac 23563657  T
Q  153 gagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttag 209  Q
     | ||||||||  |||||||||||||||||||   ||| ||||||| ||||||||||    
T  23563658 aaaagcattgggcagtgtgataccacccatatatgcagccgatgtgcatgctcttag 23563714  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 210
Target Start/End: Original strand, 48265287 - 48265416
Alignment:
Q  81 tagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccaccc 180  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||| ||||| ||||||||| | ||||||||  |||||||||||||||    
T  48265287 tagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattatccatgatcttatgacacaaaagcattggacagtgtgataccaccc 48265386  T
Q  181 atatggacagacgatgtgtatgctcttaga 210  Q
    |||||  ||| ||||||| ||| |||||||    
T  48265387 atatgtgcaggcgatgtgcatgttcttaga 48265416  T

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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 39375604 - 39375510
Alignment:
Q  115 ctcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttag 209  Q
    |||||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||    
T  39375604 ctcaattccaaagccaattatccatgatattatgacacaagagtattggttagtatgataccacccatatggacaggcaatgtgtatgctcttag 39375510  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 39375663 - 39375627
Alignment:
Q  20 ttaattaaaagaaataaaactcaaagtattacaaaat 56  Q
    ||||||||||||||||||||| |||||||||||||||    
T  39375663 ttaattaaaagaaataaaacttaaagtattacaaaat 39375627  T

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Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 40278604 - 40278492
Alignment:
Q  94 ctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacg 193  Q
    |||||||| ||||||||||||||||||| ||| | |||||||| ||||| ||||||||| | ||||||||  ||||||||||||||||||||  ||| ||    
T  40278604 ctaccatggatagtttaactactcaatttcaatgtcaattatccatgattttatgacacaaaagcattggccagtgtgataccacccatatgtgcaggcg 40278505  T
Q  194 atgtgtatgctct 206  Q
    |||||||||||||    
T  40278504 atgtgtatgctct 40278492  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 45888823 - 45888944
Alignment:
Q  87 tgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatgg 186  Q
    |||||||| || ||| ||| |||| |||||||  ||||| |||||||||| | | || |||||||| | ||||||||||| |||  ||||||| || | |    
T  45888823 tgcattgcaactatggataatttagctactcatatccaatgccaattatccaagttactatgacacaaaagcattggttaatgtattaccacctattttg 45888922  T
Q  187 acagacgatgtgtatgctctta 208  Q
    || |||||||||||||||||||    
T  45888923 accgacgatgtgtatgctctta 45888944  T

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