View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_206 (Length: 231)
Name: NF6874A_low_206
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_206 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 16385513 - 16385721
Alignment:
| Q |
1 |
attataaaagggaaaacaagttaagaatatcatccaaacttaaatctcaaccaattannnnnnnggctactaatttttgttgctaaatatattttattta |
100 |
Q |
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| T |
16385513 |
attataaaagggaaaacaagttaagaatatcatccaaacttaaatcccaaccaattatttttttggctactaatttttgttgctaaatatattttattta |
16385612 |
T |
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| Q |
101 |
acacttatactttagagaggnnnnnnnnnnnnnnnnnnnnnccttaatttggtccctctcttcttcaaaatcacgtgttcgaagaagttgttcatcctca |
200 |
Q |
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| T |
16385613 |
acactgatactttagagag---ttataataataaataaataccttaatttggtccctctcttcttcaaattcacgtgttcgaagaagatgttcatcctca |
16385709 |
T |
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| Q |
201 |
cccaaagcagag |
212 |
Q |
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| T |
16385710 |
cccaaagcagag |
16385721 |
T |
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Target: scaffold0011 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 12182 - 12112
Alignment:
| Q |
142 |
ccttaatttggtccctctcttcttcaaaatcacgtgttcgaagaagttgttcatcctcacccaaagcagag |
212 |
Q |
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| T |
12182 |
ccttaatctggtccctctcttcttcaaattcacgaggtcgatgtagtcgttcattctcacccaaagcagag |
12112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 17588806 - 17588868
Alignment:
| Q |
142 |
ccttaatttggtccctctcttcttcaaaatcacgtgttcgaagaagttgttcatcctcacccaaag |
207 |
Q |
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| T |
17588806 |
ccttaatctggtccctctctgcttcaaattcatgtgttggaag---ttgttcatcctcacccaaag |
17588868 |
T |
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