View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_208 (Length: 231)
Name: NF6874A_low_208
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_208 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5337099 - 5336877
Alignment:
| Q |
1 |
ttaattatttaagcatgaattatgtgtgagaaagtccatctagttatttccgtatctgtttgatagttggtagtagtatatcatgtcttgcatacctcac |
100 |
Q |
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| T |
5337099 |
ttaattatttaagcatgaattatgtgtgagaaagtccatctagttatttccgtatctgtttgatagttggtagtagtatatcatgtcttgcatacctcac |
5337000 |
T |
|
| Q |
101 |
gggttgaacttaaagcaagggttatgtgttaaaacatatttcttactagacagtatggttagatatgttttttgtctctatgtaattggtattagttatt |
200 |
Q |
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| T |
5336999 |
gggttgaacttaaagcgagggttatgtgttaaaacatatttcttactagacagtatggttagatatgttttttgtctctatgtaattggcattagttatt |
5336900 |
T |
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| Q |
201 |
taaagttttatattagttatttt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
5336899 |
taaagttttatattagttatttt |
5336877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 5376743 - 5376702
Alignment:
| Q |
180 |
atgtaattggtattagttatttaaagttttatattagttatt |
221 |
Q |
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| T |
5376743 |
atgtaattgttattggttatttaaagttttatattaattatt |
5376702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 5428488 - 5428447
Alignment:
| Q |
180 |
atgtaattggtattagttatttaaagttttatattagttatt |
221 |
Q |
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| T |
5428488 |
atgtaattgctattagttatttagagttttatattatttatt |
5428447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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