View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_216 (Length: 230)
Name: NF6874A_low_216
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_216 |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 1956962 - 1957080
Alignment:
| Q |
106 |
catattatggatttgattgaactttcatgcactttgaaggaggctagaggctgataggtttttcacaagcaacttcaattaggagacatacaccaaaaag |
205 |
Q |
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| T |
1956962 |
catattatggatttgattaaattttcatgcactttgaaggaggctagaggctgataggtttttcacaagcaacttcaatgaggagacatacaccaaaaag |
1957061 |
T |
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| Q |
206 |
ggtttggaatgggtgaaca |
224 |
Q |
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| T |
1957062 |
ggtttggaatgggtgaaca |
1957080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 224
Target Start/End: Original strand, 1942053 - 1942161
Alignment:
| Q |
116 |
atttgattgaactttcatgcactttgaaggaggctagaggctgataggtttttcacaagcaacttcaattaggagacatacaccaaaaagggtttggaat |
215 |
Q |
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| T |
1942053 |
atttgattgaactttaatgcactttgcaggaggctagagggtgatagatttttcacaagcaactacaatgaggagacatacactgaaaagggtttgaaat |
1942152 |
T |
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| Q |
216 |
gggtgaaca |
224 |
Q |
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| T |
1942153 |
gggtgaaca |
1942161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 116 - 224
Target Start/End: Original strand, 1928076 - 1928184
Alignment:
| Q |
116 |
atttgattgaactttcatgcactttgaaggaggctagaggctgataggtttttcacaagcaacttcaattaggagacatacaccaaaaagggtttggaat |
215 |
Q |
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||||||||||||||| |||||||||| ||||||||||| | |||||| |||||||||||| ||| |||| |||||||||||||||||||||| || |||| |
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| T |
1928076 |
atttgattgaactttaatgcactttgtaggaggctagaaggtgatagatttttcacaagctactacaatgaggagacatacaccaaaaaggggttagaat |
1928175 |
T |
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| Q |
216 |
gggtgaaca |
224 |
Q |
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|||| |||| |
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| T |
1928176 |
gggtcaaca |
1928184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 36774873 - 36774912
Alignment:
| Q |
28 |
ttttaaatcccataagaacgagtgtgatatgcctcagtat |
67 |
Q |
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| T |
36774873 |
ttttaaatcccataagaacaagtgtgatatgcctcagtat |
36774912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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