View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_226 (Length: 229)
Name: NF6874A_low_226
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_226 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 7211975 - 7211747
Alignment:
| Q |
7 |
ctgcagcctcttcttgcgtgcctatataatttttatggctcactaattagataaaatatcaagatactcaattaaactagaacatgatatcataaaagtc |
106 |
Q |
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| T |
7211975 |
ctgcagcctcttcttgcgtgcctatataatttttatggctcactaattagataaaatatcaagatactcaattaaactagaacatgatatcataaaagtc |
7211876 |
T |
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| Q |
107 |
agattatatttcacac----tatcatgcttaacaacaatgcaaaatagaatgaatgcgtaggtttggatttgcggtgtgattttggagcttcgacaaaat |
202 |
Q |
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| T |
7211875 |
agattatatttcacactatatatcatgcttaacaacaatgcaaaatagaatgaatgcgtaggtttggatttgcggtgtgattttggagcttcgacaaaat |
7211776 |
T |
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| Q |
203 |
catggtgcc--atcgtgatttcgtcaaag |
229 |
Q |
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| T |
7211775 |
catggtgccatatcatgatttcgtcaaag |
7211747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 7211705 - 7211672
Alignment:
| Q |
196 |
acaaaatcatggtgccatcgtgatttcgtcaaag |
229 |
Q |
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| T |
7211705 |
acaaaatcatggtgtcatcgtgatttcgtcaaag |
7211672 |
T |
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