View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_228 (Length: 229)
Name: NF6874A_low_228
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_228 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 9538528 - 9538749
Alignment:
| Q |
7 |
agtttgaggttggtatggttaatttggtgggaatgtaaagaacaaagaacaatgttgaggttaggatagatgcaataatgaaaattttgatatccatttg |
106 |
Q |
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| T |
9538528 |
agtttgaggttggtatggttaatttggtgggaatgtaaagaacaaagaacaatgttgaggttaggatagatgcaataatgaaaattttgatatccatttg |
9538627 |
T |
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| Q |
107 |
agagatggatgattgtgaagaaattaagtttgagaattggagagaaagttagaagaaaaaatgtatgagagttgagtaaagagtaatgaagaaggggtta |
206 |
Q |
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| T |
9538628 |
a-agatggatgattgtgaagaaattaagtttgagaattggagaggaagttagaagaaaaaatatatgagagttgagtaaagagtcatgaagaagtggtta |
9538726 |
T |
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| Q |
207 |
aatgctttgataaaggaacttag |
229 |
Q |
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| T |
9538727 |
aatgctttgataaagggacttag |
9538749 |
T |
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