View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6874A_low_230 (Length: 229)

Name: NF6874A_low_230

Description: NF6874A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6874A_low_230

[»] chr5 (2 HSPs)

Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 82; E-Value: 7e-39

Query Start/End: Original strand, 7 - 171

Target Start/End: Original strand, 18729014 - 18729164

Alignment:

Q	7	ttgcttactttacacaatgtatgattgggatttcgtgccaattttaaacaatctcataccgttagattttgat--tatagttgagattcgtacctatgtg	104	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18729014	ttgcttactttacacaatgtatgattgggatttcttgtcaattttaaacaatctcataccgtt-gatttagataatatagttgagattcgtacctatgt-	18729111	T

Q	105	tcaatgtttttgcagataatctagtaatacacaatgtaggattatgaaggctacttgtttaagttta	171	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18729112	--------------gataatctagtaatacacaatggaggattatgaaggctacttgtttaagttta	18729164	T

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Target: chr5; HSP #2

Raw Score: 43; E-Value: 0.000000000000001

Query Start/End: Original strand, 163 - 213

Target Start/End: Original strand, 18729361 - 18729411

Alignment:

Q	163	ttaagtttaaactacttctttattcaaaacttcatatattagagttttgtt	213	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18729361	ttaagtttaaactacttctttattcaaaacttgagatattagagttttgtt	18729411	T

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