View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_235 (Length: 228)
Name: NF6874A_low_235
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_235 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5484671 - 5484450
Alignment:
| Q |
1 |
accttaactgtttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaacataa |
100 |
Q |
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| T |
5484671 |
accttaactgtttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaacataa |
5484572 |
T |
|
| Q |
101 |
aattacgcggcattaataattctcttttcacttttccctatagatcttttttccttctttatctgcttcttgactgacatttacttcaaactacagatca |
200 |
Q |
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| T |
5484571 |
aattacgtggcattaataattctcttttcacttttccctgtagatcttttttccttctttatctgcttcttgaatgacatttacttcaacctacagatca |
5484472 |
T |
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| Q |
201 |
tataaagaatacgagaaacttg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
5484471 |
tataaagaatacgagaaacttg |
5484450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 5525652 - 5525588
Alignment:
| Q |
34 |
aaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaacat |
98 |
Q |
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| T |
5525652 |
aaaacacataaatgccaacttctgaaaataatcaacctctaggaattgagtaccgttcaaaacat |
5525588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 5525557 - 5525497
Alignment:
| Q |
160 |
tatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaact |
220 |
Q |
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| T |
5525557 |
tatctgcttgttgactgacatttacttcaaccatcagatcataaaaagaataagaggaact |
5525497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 5525715 - 5525676
Alignment:
| Q |
1 |
accttaactgtttaattaataggaaaagattacaaaacat |
40 |
Q |
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| T |
5525715 |
accttaacagtttaattaataggaatagattacaaaacat |
5525676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 20343390 - 20343322
Alignment:
| Q |
154 |
cttctttatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaacttg |
222 |
Q |
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| T |
20343390 |
cttctatacctgcttgttgactgacatttatttcaaccctcagatcataaaaagaataagaggaacttg |
20343322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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