View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_236 (Length: 228)
Name: NF6874A_low_236
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_236 |
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Alignment Details
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 7617833 - 7617744
Alignment:
| Q |
138 |
ttatatctgagtcagacatggtgcttaaccttaaaaattgtctggtcttaatttatgtttgtactttgttgttcaaagcaaaacaaaaaa |
227 |
Q |
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| T |
7617833 |
ttatatctgagtcagacatggtgcttaaccttaaaaattgtctggtcttaatttatgtttgtactttgttgttcaaagcaaaacaaaaaa |
7617744 |
T |
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Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 7617964 - 7617891
Alignment:
| Q |
7 |
aatagtttctccaatgaaaggccaacccattcttcctggtggaagattaaggttgggtttggcttgttttgttt |
80 |
Q |
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| T |
7617964 |
aatagtttctccaatgaaaggccaacccattcttcctggtggaagattaaggttgggtttggcttgttttgttt |
7617891 |
T |
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