View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_241 (Length: 227)
Name: NF6874A_low_241
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_241 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 24125295 - 24125520
Alignment:
| Q |
1 |
aagtgaacactctcaggtggggttgacaaaaactaggtccttggtttcagagatagtctgacctagactcaccccccatcgccctactctattagctcca |
100 |
Q |
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| T |
24125295 |
aagtgaacactcccgggtggggttgacaaaaactaggtccttgtttccagggatagtctgacctagactcaccccccatcgccctactctattagctcca |
24125394 |
T |
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| Q |
101 |
atataaaatcaaggccaatttccactcgtaataggtacatgatgtatgannnnnnncttcaacggaaccattttcagaaagaaaaacaagtggaaagttg |
200 |
Q |
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| T |
24125395 |
atataaaatcaaggccaatttccactcataataggtacatgatgtatgatttttttcttcaacggaaccattttcagaaagaaaaacaagtggaaagttg |
24125494 |
T |
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| Q |
201 |
attccacatgtgtcccatagagagca |
226 |
Q |
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| T |
24125495 |
attccacatgtgtcctatagagagca |
24125520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 45163287 - 45163235
Alignment:
| Q |
164 |
ggaaccattttcagaaagaaaaacaagtggaaagttgattccacatgtgtccca |
217 |
Q |
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| T |
45163287 |
ggaaccattttcagaaagaagaacaagtggaaagttgatt-cacatgtgtccca |
45163235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 45163388 - 45163326
Alignment:
| Q |
1 |
aagtgaacactctcaggtggggttgacaaaaactaggtccttggtttcagagatagtctgacc |
63 |
Q |
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|||||||||||| ||||||||||| ||| ||| ||||||||| |||||| |||||| ||||| |
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| T |
45163388 |
aagtgaacactcctaggtggggttggcaagaaccaggtccttgctttcagggatagtttgacc |
45163326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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