View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_243 (Length: 225)
Name: NF6874A_low_243
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_243 |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 9130913 - 9130689
Alignment:
| Q |
1 |
ggctagagattgtgaggatattgtggatgagatcaaagtgttatctttgaaatggagtcttagccgtttaaaggggagccctcggttattctatgaatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| |
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| T |
9130913 |
ggctagagattgtgaggatattgtggatgagatcaaggtgttatctttgaaatggagtcttacccgcttaaaggggagcccttggttattctatgaatgg |
9130814 |
T |
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| Q |
101 |
agttgggatccgggagaatgattgaagaggagtccagctgcagcaggtcagtggtccgtctggatgtcttttttctggttttgggggctgttggaagggg |
200 |
Q |
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| T |
9130813 |
agttgggattcgggagaatgattgaagaggagtctagctgcagcagatcagtggtccgtctggatgtcttttttctggttttgggggctgttggaagtgg |
9130714 |
T |
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| Q |
201 |
ttgctgctttccgtccgctgaattg |
225 |
Q |
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| T |
9130713 |
ttgctgctttctgtcggctgaattg |
9130689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 9122798 - 9122593
Alignment:
| Q |
20 |
attgtggatgagatcaaagtgttatctttgaaatggagtcttagccgtttaaaggggagccctcggttattctatgaatggagttgggatccgggagaat |
119 |
Q |
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| T |
9122798 |
attgtcgatgagatcaaagtgttatctttgaaatggagtcttagccgtttaaaggggagcccttggttattctatgaatggagttgagatccgggagaat |
9122699 |
T |
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| Q |
120 |
gattgaagaggagtccagctgcagcaggtcagtggtccgtctggatgtcttttttctggttttgggggctgttggaaggggttgctgctttccgtccgct |
219 |
Q |
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| T |
9122698 |
gattgaagaggagtcgagctgcagcagatcagtggtccgtctggatgtcttttttctggttttgggggctgttggaagtggttgctgctttctgtcggct |
9122599 |
T |
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| Q |
220 |
gaattg |
225 |
Q |
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|||||| |
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| T |
9122598 |
gaattg |
9122593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 24524767 - 24524542
Alignment:
| Q |
1 |
ggctagagattgtgaggatattgtggatgagatcaaagtgttatctttgaaatggagtcttagccgtttaaaggggagccctcggttattctatgaatgg |
100 |
Q |
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| T |
24524767 |
ggctagagattgtgaggatattgtggatgagatcaaggtgttatctttgaaatggagtcttacccgcttaaaggggagcccttggttattctatgaatgg |
24524668 |
T |
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| Q |
101 |
agttgggatccgggagaatgattgaagaggagtccagctgcagcaggtcagtggtccgtctggatgtcttttttc-tggttttgggggctgttggaaggg |
199 |
Q |
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| T |
24524667 |
agttgggattcgggagaatgattgaagaggagtccagctgcagcagatcagtggtccgtctggatgtcttttttcttggttttgggggctgttggaagtg |
24524568 |
T |
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| Q |
200 |
gttgctgctttccgtccgctgaattg |
225 |
Q |
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| T |
24524567 |
gttgctgctttctgtcggctgaattg |
24524542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 10323219 - 10323138
Alignment:
| Q |
1 |
ggctagagattgtgaggatattgtggatgagatcaaagtgttatctttgaaatggagtcttagccgtttaaaggggagccct |
82 |
Q |
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| T |
10323219 |
ggctagagattgtaaggatattgtggatgaaatcaagatgttgtcatggtaatgaagtctttgccatttaaaggggagccct |
10323138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 10323126 - 10323079
Alignment:
| Q |
128 |
aggagtccagctgcagcaggtcagtggtccgtctggatgtcttttttc |
175 |
Q |
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| T |
10323126 |
aggagtccagctgaagcagataagtggtccgtctggatgtcatttttc |
10323079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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