View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6874A_low_244 (Length: 225)
Name: NF6874A_low_244
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_244 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 33992513 - 33992689
Alignment:
| Q |
30 |
agaagaagtggaaatgggatcagaagagctaaacaagaaccttttgcagcatcaaaacccttcagaggaggatgaagagtcactagggaaaagggtatgg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
33992513 |
agaagaagtggaaatgggatcagaagagctaaacaagaaccttttacagcatcaaaacccttcagaggaggatgaagagtccctaaggaaaagggtatgg |
33992612 |
T |
|
| Q |
130 |
gaagaaagcaagaagctgtggatagtagcaggtcctgccatattcaataggttttcaacatttggtatcatggtagt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33992613 |
gaagaaagcaagaagctgtggatagtagcaggtcctgccatattcaataggttttcaacatttggtatcatggtagt |
33992689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 33982755 - 33982931
Alignment:
| Q |
30 |
agaagaagtggaaatgggatcagaagagctaaacaagaaccttttgcagcatcaaaacccttcagaggaggatgaagagtcactagggaaaagggtatgg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| ||||||| |||||| |
|
|
| T |
33982755 |
agaagaagtggaaatgggatcagaagagctaaacaagaaccttttgcagcatcaaaatacttcagaggaggaagaagagccactaaggaaaagagtatgg |
33982854 |
T |
|
| Q |
130 |
gaagaaagcaagaagctgtggatagtagcaggtcctgccatattcaataggttttcaacatttggtatcatggtagt |
206 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||| |||| ||||||||||||||||||||||||| |||| |
|
|
| T |
33982855 |
aaagaaagcaagaagttgtggatagtagcaggccctgccatgttcactaggttttcaacatttggtatcatgatagt |
33982931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 192
Target Start/End: Complemental strand, 9219525 - 9219437
Alignment:
| Q |
104 |
aagagtcactagggaaaagggtatgggaagaaagcaagaagctgtggatagtagcaggtcctgccatattcaataggttttcaacattt |
192 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||| | ||| |||| ||||| ||||| ||||||| | |||||||||||| |
|
|
| T |
9219525 |
aagaatcactaaggaaaagggtatgggaagaaagcaagaagatttgggtagtggcagggcctgcaatattcacaaaattttcaacattt |
9219437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 9240596 - 9240524
Alignment:
| Q |
103 |
gaagagtcactagggaaaagggtatgggaagaaagcaagaagctgtggatagtagcaggtcctgccatattca |
175 |
Q |
| |
|
||||| |||||| | ||||||||||||||||||||||||||| | |||| ||||||||| ||||| ||||||| |
|
|
| T |
9240596 |
gaagaatcactaagaaaaagggtatgggaagaaagcaagaagatttggagagtagcagggcctgcaatattca |
9240524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University