View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_245 (Length: 225)
Name: NF6874A_low_245
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_245 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 34683397 - 34683208
Alignment:
| Q |
20 |
ttttttgtgtgtttggataagattttaataaattctgaagctctagggctgcattattcatctctatgactagaatatcaagtttgcttgattttttcat |
119 |
Q |
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| T |
34683397 |
ttttttgtgtgtttggataagattttaataaattctgaagctctagggctgcattattcatctctatgactagaatatcaagtttgtttgattttttcat |
34683298 |
T |
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| Q |
120 |
tttctttattgtacttgccaactctcttaggatatttgcagagttgtctcccactttcatagaggttctgctcataatcttcatgatgtc |
209 |
Q |
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| T |
34683297 |
tttctttattgtacttgccaactctcttaggacatttgcagagttgtctcccacttttatagaggttctgctcataatcttcatgatgtc |
34683208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 34699611 - 34699430
Alignment:
| Q |
25 |
tgtgtgtttggataagattttaataaattctgaagctctagggctgcattattcatctctatgactagaatatcaagtttgcttgattttttcattttct |
124 |
Q |
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| T |
34699611 |
tgtgtgtttgaatatgattttaataaattttgtagctcttgtgtagcaatattcatctctttgaccaaactatcaagtttctttgactttgtcatattat |
34699512 |
T |
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| Q |
125 |
ttattgtacttgccaactctcttaggatatttgcagagttgtctcccactttcatagaggttctgctcataatcttcatgat |
206 |
Q |
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| T |
34699511 |
tgattgtaattgatagctctcttaagacactcgcagagttggctcccactttcattgatgttgtgctcataatcttcttgat |
34699430 |
T |
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