View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6874A_low_248 (Length: 223)
Name: NF6874A_low_248
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_248 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 23840431 - 23840619
Alignment:
| Q |
15 |
ggtttaaataaagatttatgacagctatgtaggctgtgacataacggttgcatcagttatatctaatcgcgattctacacaatattaaggatcgcaacac |
114 |
Q |
| |
|
|||||||||||||| || ||||||||| ||| |||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
23840431 |
ggtttaaataaagacttgcgacagctatctagcttgtgacataatggttgcatcagttatatctaaccgcgattctacgcaatattaaggatcgcaacac |
23840530 |
T |
|
| Q |
115 |
aaagacaacccgttatacgaagtacaaagactaaaaaagacact--gnnnnnnngttaccttgtcatcgatgaatttcgaccaaaatcg |
201 |
Q |
| |
|
|||||||| |||||| |||||||| | ||||||||| | ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23840531 |
gaagacaacgtgttataggaagtacatatactaaaaaaaatactaaaagaagaagttaccttgtcatcgatgaatttcgaccaaaatcg |
23840619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 23861237 - 23861270
Alignment:
| Q |
168 |
ttaccttgtcatcgatgaatttcgaccaaaatcg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
23861237 |
ttaccttgtcatcgatgaatttcgaccaaaatcg |
23861270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 23844033 - 23844067
Alignment:
| Q |
167 |
gttaccttgtcatcgatgaatttcgaccaaaatcg |
201 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23844033 |
gttaccttgtcatcgatgaattttgaccaaaatcg |
23844067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University