View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_251 (Length: 221)
Name: NF6874A_low_251
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_251 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 5831867 - 5832045
Alignment:
| Q |
22 |
tgataccaccctagagtcaagaagttccattataggagtgaaactcacgcacctaggaactttatactgattgatacttgcaccacgcgatattgcataa |
121 |
Q |
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| T |
5831867 |
tgataccaccctagagtcaagaagttccattataggagtgaaactcacgcacctaggaactttatactgattgatacttgcaccacgcgatattgcataa |
5831966 |
T |
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| Q |
122 |
tccattagttcctcaaacgcgccatttttcaccacacaaatctctaatggcccaattgaattatcagcaactcttcctt |
200 |
Q |
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| T |
5831967 |
tccattagttcctcaaacgtgccatttttcaccacacgaatctctaatggcccaattgaattatcagcaactcttcctt |
5832045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 33 - 200
Target Start/End: Complemental strand, 5824161 - 5823994
Alignment:
| Q |
33 |
tagagtcaagaagttccattataggagtgaaactcacgcacctaggaactttatactgattgatacttgcaccacgcgatattgcataatccattagttc |
132 |
Q |
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| T |
5824161 |
tagagtcaagaagttccactacaggtgtgagactcacgcacctaggaactttatattgattaatcgatgcaccacacgatatataataatccatcaaatc |
5824062 |
T |
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| Q |
133 |
ctcaaacgcgccatttttcaccacacaaatctctaatggcccaattgaattatcagcaactcttcctt |
200 |
Q |
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| T |
5824061 |
ctcgaatgtgccatttttcaccacacgaatctctaatggcccaattgaattatcagcaactcttcctt |
5823994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 192
Target Start/End: Complemental strand, 78929 - 78763
Alignment:
| Q |
26 |
accaccctagagtcaagaagttccattataggagtgaaactcacgcacctaggaactttatactgattgatacttgcaccacgcgatattgcataatcca |
125 |
Q |
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| T |
78929 |
accaccctagagtccaaaagctccattataggagtaaaattaacacaccttggaactttatattgatttattgaagcacctcttgagattgcataatcca |
78830 |
T |
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| Q |
126 |
ttagttcctcaaacgcgccatttttcaccacacaaatctctaatggcccaattgaattatcagcaac |
192 |
Q |
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| T |
78829 |
taagctcctcaaaagttccactcttcacaacccttatctccaatggtccaattgaatgatcagcaac |
78763 |
T |
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