View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_254 (Length: 220)
Name: NF6874A_low_254
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_254 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 40614424 - 40614591
Alignment:
| Q |
20 |
cctatgtctgttgggtttgaggttaatttcttgttttagtagcaggttttataattttcctcttctacaaggcacacacccttttggccacatttannnn |
119 |
Q |
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| T |
40614424 |
cctatttcggttgggtttgagggtaatttcttgttttagtagcaggttttataattttcctcttctacaaggcacac--ccttttggccacatttatttt |
40614521 |
T |
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| Q |
120 |
nnnctcaactctataattttccccttcgacaagtcacaggtgtttcgccacatttatttatttaaataac |
189 |
Q |
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| T |
40614522 |
tttctcaactctataattttccccttcgacaagtcacaggtgtttcgccacatttatttatttaaataac |
40614591 |
T |
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Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 189
Target Start/End: Original strand, 40610473 - 40610630
Alignment:
| Q |
29 |
gttgggtttgaggttaatttcttgttttagtagcaggttttataattttcctcttctacaaggcacacacccttttggccacatttannnnnnnctcaac |
128 |
Q |
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| T |
40610473 |
gttgggtttgagggtaattt-ttattttagtggcaggttgtataattttccccttctacaaggcacac--ccttttggccacgtttatttttttctcaac |
40610569 |
T |
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| Q |
129 |
tctataattttccccttcgacaagtcacaggtgtttcgccacatttatttatttaaataac |
189 |
Q |
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| T |
40610570 |
tctctaattttccccttcgacaagtcacatgtgtttcgcgacatttatttatttaaataac |
40610630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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