View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_261 (Length: 217)
Name: NF6874A_low_261
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_261 |
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| [»] scaffold0896 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 5e-89; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 7140355 - 7140536
Alignment:
| Q |
16 |
catcatcgtccacaccaaagtcaaaggaccctaaaaacaagtaggttaatgctggaaaattcaaagaatttggaaataatgttcgttgaggaaaagcaac |
115 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
7140355 |
catcatcgtccacaccaaagtcaaaggaccctaaaaagaagtaggttaatgctggaaaattcaaagaattttgaaataatgttcgttgacgaaaagcaac |
7140454 |
T |
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| Q |
116 |
acaaatgtgaagagatgttaaagtgtcacatgaaaagaagtaagaccgaagatgttgaacttttctgacatcgattcgtact |
197 |
Q |
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| T |
7140455 |
acaaatgtgaagagatgttaaagtgtcacatgaaaagaagtaagactgaagatgttgaacttttctgacatcgattcgtact |
7140536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 8656270 - 8656449
Alignment:
| Q |
16 |
catcatcgtccacaccaaagtcaaaggaccctaaaaacaagtaggttaatgctggaaaattcaaagaatttggaaataatgttcgttgaggaaaagcaac |
115 |
Q |
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| T |
8656270 |
catcatcgtccacaccaaagtcaaaggaccctaaaaataagtaggttaatgctggaaatttcaaagaatttggaaataatgttcgttgaggaaaagcaac |
8656369 |
T |
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| Q |
116 |
acaaatgtgaagagatgttaaagtgtcacatgaaaagaagtaagaccgaagatgttgaacttttctgacatcgattcgta |
195 |
Q |
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| T |
8656370 |
acaaatgtgaagagatgttaaagtgtcacatgaaaagaagtaagactgaagatgtttaacttttttgacatcgattcgta |
8656449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 8679970 - 8680112
Alignment:
| Q |
20 |
atcgtccacaccaaagtcaaaggaccctaaaaacaagtaggttaatgctggaaaattcaaagaatttggaaataatgttcgttgaggaaaagcaacacaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8679970 |
atcgtccacaccaaagtcaaaggaccctaaaaacaagtaggttaatcatggaaaattcaaagaatttggaaataatgttcgttgaggaaaagcaacagaa |
8680069 |
T |
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| Q |
120 |
atgtgaagagatgttaaagtgtcacatgaaaagaagtaagacc |
162 |
Q |
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| T |
8680070 |
atgtgaagtgatgttaaagtgtcacatgaaaagaagtaagacc |
8680112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 7115153 - 7115269
Alignment:
| Q |
25 |
ccacaccaaagtcaaaggaccctaaaaacaagtaggttaatgctggaaaattcaaagaatttggaaataatgttcgttgaggaaaagcaacacaaatgtg |
124 |
Q |
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|||||| |||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||| ||| ||| |
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| T |
7115153 |
ccacacgaaagtcaaaggaccataaagacaaactagttaatgctggaaaattcaaagaatttggaaataaagttctttgaggagaagcaacagaaacgtg |
7115252 |
T |
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| Q |
125 |
aagagatgttaaagtgt |
141 |
Q |
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| T |
7115253 |
aagagatgttaaagtgt |
7115269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 7120225 - 7120341
Alignment:
| Q |
25 |
ccacaccaaagtcaaaggaccctaaaaacaagtaggttaatgctggaaaattcaaagaatttggaaataatgttcgttgaggaaaagcaacacaaatgtg |
124 |
Q |
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|||||| |||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||| ||| ||| |
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| T |
7120225 |
ccacacgaaagtcaaaggaccataaagacaaactagttaatgctggaaaattcaaagaatttggaaataaagttctttgaggagaagcaacagaaacgtg |
7120324 |
T |
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| Q |
125 |
aagagatgttaaagtgt |
141 |
Q |
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||||||||||||||||| |
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| T |
7120325 |
aagagatgttaaagtgt |
7120341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 7123629 - 7123745
Alignment:
| Q |
25 |
ccacaccaaagtcaaaggaccctaaaaacaagtaggttaatgctggaaaattcaaagaatttggaaataatgttcgttgaggaaaagcaacacaaatgtg |
124 |
Q |
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|||||| |||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||| ||| ||| |
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| T |
7123629 |
ccacacgaaagtcaaaggaccgtaaagacaaactagttaatgctggaaaattcaaagaatttggaaataaagttctttgaggagaagcaacagaaacgtg |
7123728 |
T |
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| Q |
125 |
aagagatgttaaagtgt |
141 |
Q |
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||||||||||||||||| |
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| T |
7123729 |
aagagatgttaaagtgt |
7123745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 7175036 - 7175144
Alignment:
| Q |
47 |
taaaaacaagtaggttaatgctggaaaattcaaagaatttggaaataatgttcgttgaggaaaagcaacacaaatgtgaagagatgttaaagtgtcacat |
146 |
Q |
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|||| |||||| |||||| ||||||||||||| ||||||||||||||||||| ||||| | || || | ||| || ||||||||||||||||| |||| |
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| T |
7175036 |
taaagacaagttggttaaagctggaaaattcagagaatttggaaataatgtttcttgagaatcagaaaaagaaaggttaagagatgttaaagtgtgacat |
7175135 |
T |
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| Q |
147 |
gaaaagaag |
155 |
Q |
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| T |
7175136 |
gaaaagaag |
7175144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 13492369 - 13492331
Alignment:
| Q |
60 |
gttaatgctggaaaattcaaagaatttggaaataatgtt |
98 |
Q |
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| T |
13492369 |
gttaatgctggaaaattcaaagaatttggaaataatgtt |
13492331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0896
Description:
Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 2640 - 2595
Alignment:
| Q |
96 |
gttcgttgaggaaaagcaacacaaatgtgaagagatgttaaagtgt |
141 |
Q |
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| T |
2640 |
gttctttgaggagaagcaacagaaacgtgaagagatgttaaagtgt |
2595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 38862905 - 38862945
Alignment:
| Q |
60 |
gttaatgctggaaaattcaaagaatttggaaataatgttcg |
100 |
Q |
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|||||||| || ||||||||||| ||||||||||||||||| |
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| T |
38862905 |
gttaatgcgggcaaattcaaagattttggaaataatgttcg |
38862945 |
T |
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