View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_262 (Length: 217)
Name: NF6874A_low_262
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_262 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 28548549 - 28548765
Alignment:
| Q |
1 |
gttatatatcaaaactctggttatcaaatgcatttttatattatacccatttgaaagaattccggttgttttttgcttttaaaccttgtaatttaaaaaa |
100 |
Q |
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| T |
28548549 |
gttatatatcaaaactccagttatcaaatgcacttttatactatacc-atttgaaagaattccggttgttttttgcttttaaaccttgtaatttaagaaa |
28548647 |
T |
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| Q |
101 |
ttagatttcgctcaaattacatgaataaaagtacatttaacctagaaatagccaatacaac-ttgcatattagacttaagtagagcctattctatgtcat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28548648 |
ttagatttcgctcaaattacatgaataaaagtacatttaatctagaaatagccaatacaactttgcatattagacttaagtagagcctattctatgtcat |
28548747 |
T |
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| Q |
200 |
actttagttttaaattct |
217 |
Q |
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|||||||||||||||||| |
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| T |
28548748 |
actttagttttaaattct |
28548765 |
T |
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