View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_268 (Length: 212)
Name: NF6874A_low_268
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_268 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 33104705 - 33104508
Alignment:
| Q |
15 |
tggacatcaaggttaattatatacctgaacaatagctacacgtaaaaggttaccacgccggccaacagcaatggaagctgcagccatgactgcaggacct |
114 |
Q |
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| T |
33104705 |
tggaaatcaaggttaattatatacctgaacaatagctacacgtaaaaggttaccacgcagtccaacagcaatggaagctgcagccatgactgcaggacct |
33104606 |
T |
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| Q |
115 |
gtaagaaatcgaacagccattgcaaatgaagcaactgagtttccacatgcaatcatcttgggttgtagagccataaacaaacctatgcatatgcaaac |
212 |
Q |
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| T |
33104605 |
gtaagaaatcgaacagccattgcaaatgaagcaactgagtttccacatgcaatcatcttgggttgtagagccataaacaaacctgtgcatatgcaaac |
33104508 |
T |
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Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 37 - 199
Target Start/End: Original strand, 10835806 - 10835968
Alignment:
| Q |
37 |
acctgaacaatagctacacgtaaaaggttaccacgccggccaacagcaatggaagctgcagccatgactgcaggacctgtaagaaatcgaacagccattg |
136 |
Q |
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| T |
10835806 |
acctgaacaatagctacatgtaggagggtcccacggaggccaacggcgatagaagctgctgccataactgctggaccagtaaggaatcttatagccatgg |
10835905 |
T |
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| Q |
137 |
caaatgaagcaactgagtttccacatgcaatcatcttgggttgtagagccataaacaaaccta |
199 |
Q |
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| T |
10835906 |
caaatgaagcaacagaattcccacatgcaatgatcttgggttgaagagccataaacagaccta |
10835968 |
T |
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