View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_269 (Length: 211)
Name: NF6874A_low_269
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_269 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 32880109 - 32879940
Alignment:
| Q |
21 |
aagataattaagatgactcgttcccttaagaaccacaaatgacacctagctagctgaagaaggaggagattctaaatcaaaaagacatatgaatgtcttt |
120 |
Q |
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| T |
32880109 |
aagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgacttt |
32880010 |
T |
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| Q |
121 |
atacatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacaccctttcgtggtt |
190 |
Q |
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| T |
32880009 |
atacatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacaccctttcgtggtt |
32879940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 32898981 - 32898809
Alignment:
| Q |
21 |
aagataattaagatgactcgttcccttaagaaccacaaatgacacctagctagctgaagaaggaggagattctaaatcaaaaagacatatgaatgtcttt |
120 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32898981 |
aagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgacttt |
32898882 |
T |
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| Q |
121 |
atacatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacaccctttcgtggttcat |
193 |
Q |
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| T |
32898881 |
atacacattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacatcctttcgtggttcat |
32898809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 32884937 - 32884770
Alignment:
| Q |
21 |
aagataattaagatgactcgttcccttaagaaccacaaatgacacctagctagctgaagaaggaggagattctaaatcaaaaagacatatgaatgtcttt |
120 |
Q |
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| T |
32884937 |
aagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaag-aggaggagattctatataaaaaagacatatgaatgccttt |
32884839 |
T |
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| Q |
121 |
atacatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacaccctttcgtggttcat |
193 |
Q |
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| T |
32884838 |
atacatattcttctaaatcatgt----ttcatatatctttgtcaagtggagtgtacatccattcgtggttcat |
32884770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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