View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_27 (Length: 381)
Name: NF6874A_low_27
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 8700011 - 8699769
Alignment:
| Q |
1 |
tctagaactattatggattaactttgtaagcggttcaggcagcacctgaaattttattgcagtttttacttgatnnnnnnnnn-gttttaaataagtatt |
99 |
Q |
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| T |
8700011 |
tctagaactattatggattaagtttgtaagcggttcaagcagctcttgaaattttattgcagtttttacttgataaaaaaaaaagttttaaataagtatt |
8699912 |
T |
|
| Q |
100 |
ttctattctatcctagaatacttaatgagatggtgaggaatctcctacaagtcttgatttcaaatctagaagagttttgtgattcattgtgatgccttac |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8699911 |
ttctattctatcctagaatacttaatgagatggtgaggaatctcctagaggtcttgatttcaaatctagaagagttttgtaattcattgtgatgccttac |
8699812 |
T |
|
| Q |
200 |
ccgacttaaggaattagtctatacactttgcacaaagataccc |
242 |
Q |
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|||| ||||||||||||| ||||||||||||||| |||||||| |
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| T |
8699811 |
ccgatttaaggaattagtttatacactttgcacagagataccc |
8699769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 14382892 - 14382932
Alignment:
| Q |
93 |
aagtattttctattctatcctagaatacttaatgagatggt |
133 |
Q |
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| T |
14382892 |
aagtattttctattctatcctaaaatacttaaagagatggt |
14382932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 52773600 - 52773527
Alignment:
| Q |
1 |
tctagaactattatggattaactttgtaagcggttcaggcagcacctgaaattttattgcagtttttacttgat |
74 |
Q |
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||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
52773600 |
tctagaactattacggactaactttgtaagcggttgaggcagctcctgaaattttattgcagtttttacttgat |
52773527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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