View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_272 (Length: 210)
Name: NF6874A_low_272
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_272 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 6e-70; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 30757673 - 30757840
Alignment:
| Q |
23 |
aacaacaacaaaattccaaatttcacatccaac---tcaaaatcagtacttttatatttcttttcaaaatcatcaactaattaatccaaaactaaagtat |
119 |
Q |
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| T |
30757673 |
aacaacaacaaaattccaaacttcacatccaaacattcaaaatcagtatttttatatttcttttcaaaatcatcaactaattaatccaaaactaaagtat |
30757772 |
T |
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| Q |
120 |
ataataatcaaaattcaaaagttccaaatgaaaaatactctgcaaaatcaagaagctgagagaacaac |
187 |
Q |
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| T |
30757773 |
ataataatcaaaattcaaaagttctaaatgaaaaaaactctgcaaaatcaagaagctgagagaacaac |
30757840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 18192713 - 18192582
Alignment:
| Q |
54 |
actcaaaatcagtacttttatatttctt---ttcaaaatcatcaactaattaatccaaaa-ctaaagtatataataatcaaaattcaaaagttccaaatg |
149 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| ||||| |
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| T |
18192713 |
actcaaaatcagtacttttatatttcttcttttcaaaatcatcaactaattgatccaaaaactaaagcatataataatcaaaattcaaaagttctaaatg |
18192614 |
T |
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| Q |
150 |
aaaaatactctgcaaaatcaagaagctgagag |
181 |
Q |
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| T |
18192613 |
aaaagaactctacaaaatcaagaggcttagag |
18192582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 154
Target Start/End: Complemental strand, 31856876 - 31856771
Alignment:
| Q |
54 |
actcaaaatcagtacttttatatttcttt-----tcaaaatcatcaactaattaatccaaaactaaagtatataataatcaaaattcaaaagttccaaat |
148 |
Q |
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| T |
31856876 |
actcaaaatctatacttttatatttctttccttttcaaaatcattaattaattgatctaaaactaaatcatataataataaaaaacccaaaattctaaat |
31856777 |
T |
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| Q |
149 |
gaaaaa |
154 |
Q |
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|||||| |
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| T |
31856776 |
gaaaaa |
31856771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 181
Target Start/End: Complemental strand, 36164319 - 36164153
Alignment:
| Q |
23 |
aacaacaacaaaattccaaatttcacatccaa---ctcaaaatcagtacttttatatttcttt----tcaaaatcatcaactaattaatccaaaa-ctaa |
114 |
Q |
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|||||||||||||| ||||||||||| | ||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||| |
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| T |
36164319 |
aacaacaacaaaatcccaaatttcactttcaaacactcaaaatcagtacttttatatttctttcttttcaaaatcatcaactaattgatccaaaaactaa |
36164220 |
T |
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| Q |
115 |
agtatataataatcaaaattcaaaagttccaaatgaaaaatactctgcaaaatcaagaagctgagag |
181 |
Q |
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| T |
36164219 |
agcatataataatcaaaattcaaaagttctaaatgaaaagaagtctacaaaatcaagaagctgagag |
36164153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 32564871 - 32564945
Alignment:
| Q |
107 |
aaaactaaagtatataataatcaaaattcaaaagttccaaatgaaaaatactctgcaaaatcaagaagctgagag |
181 |
Q |
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|||||||||| |||||||||||||||||||||| ||| ||||||||| ||||| ||||||||||||||| |||| |
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| T |
32564871 |
aaaactaaagcatataataatcaaaattcaaaatttctaaatgaaaagaactctacaaaatcaagaagcttagag |
32564945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 5225314 - 5225249
Alignment:
| Q |
79 |
cttttcaaaatcatcaactaattaatccaaaactaaagtatataataatcaaaattcaaaagttcc |
144 |
Q |
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|||||||||| ||||||||||||||||||||||| | |||||||||||||||| |||||||||| |
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| T |
5225314 |
cttttcaaaactatcaactaattaatccaaaactataacatataataatcaaaatccaaaagttcc |
5225249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 4754719 - 4754654
Alignment:
| Q |
79 |
cttttcaaaatcatcaactaattaatccaaaactaaagtatataataatcaaaattcaaaagttccaaat |
148 |
Q |
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|||||||||| ||||||| |||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
4754719 |
cttttcaaaaccatcaaccaattaatccaaaactaaaacata----aatcaaaattcaaaagttccaaat |
4754654 |
T |
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