View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6874A_low_275 (Length: 208)
Name: NF6874A_low_275
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6874A_low_275 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 11227545 - 11227380
Alignment:
| Q |
23 |
aaacaggtcaatatataagaaaaatagtacaaagttcataaaccttaattgagttgaaaagaacaataaactatgacttatagcttattagaaaagcaca |
122 |
Q |
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| T |
11227545 |
aaacaggtcaatatataagaaaaatagtacaaagttcataaaccttaattgagttgaaaagaacaataaactatgacttatagcttattagaaaagcaca |
11227446 |
T |
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| Q |
123 |
aaatgttcatataattaaattactctaacataaaattagcatcttcatcactacagttattatgat |
188 |
Q |
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| T |
11227445 |
aaatgttcatataattaaactactctaacatgaaattagcatcttcatcactacagttattatgat |
11227380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 10128203 - 10128093
Alignment:
| Q |
33 |
atatataagaaaaatagtacaaagttcataaaccttaattgagttgaaaagaacaata--aactatgacttatagcttattagaaaagcacaaaatgttc |
130 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| || |||| | | ||||| || ||||||||| ||||| |||| ||||||| |
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| T |
10128203 |
atatataagaaaaatagtacaaagttcataaacattaattgagttgaagagtacaaaaagagctatgtctgatagcttatatgaaaaacacataatgttc |
10128104 |
T |
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| Q |
131 |
atataattaaa |
141 |
Q |
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| T |
10128103 |
atataattaaa |
10128093 |
T |
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