View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6874A_low_277 (Length: 207)

Name: NF6874A_low_277
Description: NF6874A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6874A_low_277
NF6874A_low_277
[»] chr2 (18 HSPs)
chr2 (23-192)||(44624829-44624998)
chr2 (43-192)||(44615456-44615605)
chr2 (32-192)||(39153106-39153266)
chr2 (56-184)||(39472763-39472891)
chr2 (32-187)||(39387469-39387624)
chr2 (56-192)||(39138693-39138826)
chr2 (59-192)||(39371164-39371297)
chr2 (32-192)||(39216704-39216864)
chr2 (32-192)||(39396627-39396787)
chr2 (57-186)||(39205742-39205871)
chr2 (32-187)||(39196485-39196640)
chr2 (32-187)||(39413004-39413159)
chr2 (64-186)||(44895114-44895236)
chr2 (59-192)||(39380496-39380629)
chr2 (57-183)||(39478294-39478420)
chr2 (32-187)||(39421161-39421313)
chr2 (57-186)||(39223764-39223893)
chr2 (41-160)||(39188738-39188857)
[»] chr8 (3 HSPs)
chr8 (56-192)||(44730162-44730298)
chr8 (31-192)||(44949869-44950030)
chr8 (34-192)||(45343012-45343170)
[»] chr5 (2 HSPs)
chr5 (31-187)||(17060698-17060854)
chr5 (32-187)||(33562341-33562496)
[»] scaffold0283 (1 HSPs)
scaffold0283 (31-192)||(5849-6010)
[»] chr7 (1 HSPs)
chr7 (56-192)||(19808950-19809083)
[»] chr6 (1 HSPs)
chr6 (129-186)||(16114420-16114477)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 44624998 - 44624829
Alignment:
Q  23 cttgtatccagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacc 122  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624998 cttgtatccagcaacagatccaaaaagcttttagacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacc 44624899  T
Q  123 tccaaagaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 192  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624898 tccaaataattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 44624829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 43 - 192
Target Start/End: Complemental strand, 44615605 - 44615456
Alignment:
Q  43 caaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtatt 142  Q
    |||||| ||| | |||||||||||||||||| ||| ||  |||||| |||||||| ||||||||||||||||| ||| |||||||||||||||| |||||    
T  44615605 caaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtatt 44615506  T
Q  143 ttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 192  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  44615505 ttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctc 44615456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 32 - 192
Target Start/End: Complemental strand, 39153266 - 39153106
Alignment:
Q  32 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 131  Q
    ||||||| || |||||||||  | ||||||||||| ||| ||| |||||  |||||||||||||||||||| || |||||| || |||||| ||||||||    
T  39153266 agcaacaaatgcaaaaagctccaagacttcatctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaa 39153167  T
Q  132 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 192  Q
    ||||||||||||||||| || ||||||||||| ||| | || || ||||||||||| ||||    
T  39153166 ttttcagtattttcttttattttagctttcaaatcatgtgcgagtttcaatgcttcttctc 39153106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 39472763 - 39472891
Alignment:
Q  56 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 155  Q
    ||||||||||||||||||| ||||| ||||| ||||||| ||||||| || |||||| || |||||  ||||||||||||||||||||||||||||||||    
T  39472763 gacttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaaccaagaactaccaaagaattttcagtattttctttcatgtta 39472862  T
Q  156 gctttcaactcacgcgctagcttcaatgc 184  Q
     ||||||| ||| | || |||||||||||    
T  39472863 actttcaaatcaagtgcgagcttcaatgc 39472891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 32 - 187
Target Start/End: Original strand, 39387469 - 39387624
Alignment:
Q  32 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 131  Q
    ||||||| || |||||||||  |  ||||||||||| |||||||||  | |||  |||||||| ||||||| ||  ||||| || |||||  ||||||||    
T  39387469 agcaacaaatgcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaa 39387568  T
Q  132 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 187  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  39387569 ttttcagtattttctttcatgttagcttttaaatcacgcgctagcttcaatgcttc 39387624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 39138826 - 39138693
Alignment:
Q  56 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 155  Q
    ||||||||||||||||||||||||| ||||| ||||||  |||||||||| |||||| ||||||||| ||| |||||||||||||||   ||||||||||    
T  39138826 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaaccaccagagaattttcagtatt---tttcatgtta 39138730  T
Q  156 gctttcaactcacgcgctagcttcaatgcttcatctc 192  Q
    |||||||  | | | ||||||||||||||||| ||||    
T  39138729 gctttcagattaagtgctagcttcaatgcttcttctc 39138693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 59 - 192
Target Start/End: Complemental strand, 39371297 - 39371164
Alignment:
Q  59 ttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagct 158  Q
    |||||||||||||||| |||||  |||||||||| | ||||||| ||||||||| || |||||| |||||| ||||| | |||||||||||||||| |||    
T  39371297 ttcatcttcatcaaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaagaaccaccaaaggatttttactattttctttcatgttggct 39371198  T
Q  159 ttcaactcacgcgctagcttcaatgcttcatctc 192  Q
    ||||  ||| | ||||||||||||||||||||||    
T  39371197 ttcatatcaagtgctagcttcaatgcttcatctc 39371164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 32 - 192
Target Start/End: Complemental strand, 39216864 - 39216704
Alignment:
Q  32 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 131  Q
    |||||||||| |||||||||  |  |||||||||||| ||||| |||||  |||||||||||| ||||||| ||  ||||| ||||||||| ||||||||    
T  39216864 agcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaa 39216765  T
Q  132 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 192  Q
    |||| |||||||||  ||||||||| |||||| |||   ||||||||||||||||| ||||    
T  39216764 tttttagtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctc 39216704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 32 - 192
Target Start/End: Original strand, 39396627 - 39396787
Alignment:
Q  32 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 131  Q
    |||||| ||| |||||||||  |  |||||||||||||| ||| ||||| ||||||||||||| ||||||| ||| | ||| || |||||| ||||||||    
T  39396627 agcaaccgatgcaaaaagctccaaaacttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaa 39396726  T
Q  132 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 192  Q
    ||||||||||||||| | |||| |||| |||| ||| | |||||||||| |||||| ||||    
T  39396727 ttttcagtattttctctaatgtaagctctcaaatcatgtgctagcttcagtgcttcttctc 39396787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 57 - 186
Target Start/End: Original strand, 39205742 - 39205871
Alignment:
Q  57 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 156  Q
    |||||||||| ||||||| ||  | |||||  |||||||||||||| || |||||| || |||||| ||| |||||||||||||||||||||||| ||||    
T  39205742 acttcatctttatcaaaagaatcaagcaatttataaatcgacaaaagcagtagaaaaccaagaaccgccatagaattttcagtattttctttcatcttag 39205841  T
Q  157 ctttcaactcacgcgctagcttcaatgctt 186  Q
    ||||||| |||   ||||||||||||||||    
T  39205842 ctttcaagtcaaatgctagcttcaatgctt 39205871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 32 - 187
Target Start/End: Original strand, 39196485 - 39196640
Alignment:
Q  32 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 131  Q
    ||||||| || |||||||||  |  |||||||||||||||||| ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||||||    
T  39196485 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcagcagaaagccaagaaccgccaaagaa 39196584  T
Q  132 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 187  Q
    ||||||||||| || ||||||||||||||||| |||   |||||||||||||||||    
T  39196585 ttttcagtattgtcattcatgttagctttcaaatcaaatgctagcttcaatgcttc 39196640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 32 - 187
Target Start/End: Original strand, 39413004 - 39413159
Alignment:
Q  32 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 131  Q
    ||||||| || |||||||||  | || |||||||||||| ||| |||||  ||||||| |||  ||||||| ||| ||||| |  |||||| |||||||     
T  39413004 agcaacaaatgcaaaaagctccaagatttcatcttcatccaaaaaagtaaccaatccacaaactgacaaaagcaacagaaaactaagaaccgccaaagag 39413103  T
Q  132 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 187  Q
    ||||| ||||||||||||| |||||||||||| ||| | |||||||||||||||||    
T  39413104 ttttcggtattttctttcaagttagctttcaaatcaagtgctagcttcaatgcttc 39413159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 44895114 - 44895236
Alignment:
Q  64 cttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagctttcaa 163  Q
    ||||||| ||| |||||  |||||||||||| ||||||| || |||||| || |||||| |||||||||||||||||||| |||| ||||||||||| ||    
T  44895114 cttcatcgaaagaagtaatcaatccataaattgacaaaagcagtagaaaaccaagaaccaccaaagaattttcagtatttccttttatgttagctttgaa 44895213  T
Q  164 ctcacgcgctagcttcaatgctt 186  Q
     | | | ||||||||||||||||    
T  44895214 tttatgtgctagcttcaatgctt 44895236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 59 - 192
Target Start/End: Original strand, 39380496 - 39380629
Alignment:
Q  59 ttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagct 158  Q
    |||||||||||| ||| ||||| ||||||||||||| ||||||| || ||||||||| |||||| ||| ||||| ||||||||| ||| | |||| ||||    
T  39380496 ttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcagtagaaatccaagaaccgccacagaatcttcagtattctctcttatgtaagct 39380595  T
Q  159 ttcaactcacgcgctagcttcaatgcttcatctc 192  Q
    ||||| ||| | |||||| ||| |||||| ||||    
T  39380596 ttcaaatcaagtgctagcgtcagtgcttcttctc 39380629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 57 - 183
Target Start/End: Original strand, 39478294 - 39478420
Alignment:
Q  57 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 156  Q
    |||||| |||| || ||| ||||| ||||||||||||| ||||||| || ||||||  | |||||  || |||||||||||||||||||| | |||| ||    
T  39478294 acttcaccttcttcgaaagaagtaagcaatccataaattgacaaaagcagtagaaaatcaagaactgccgaagaattttcagtattttctctgatgtaag 39478393  T
Q  157 ctttcaactcacgcgctagcttcaatg 183  Q
    ||||||| ||| | |||||||||||||    
T  39478394 ctttcaaatcatgtgctagcttcaatg 39478420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 187
Target Start/End: Original strand, 39421161 - 39421313
Alignment:
Q  32 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 131  Q
    ||||||| || |||||||||  |  |||||||||||||  |||||||||  ||||   ||||| ||||||| || |||||| |||||||||   |||  |    
T  39421161 agcaacaaatgcaaaaagctccaacacttcatcttcattgaaataagtaaccaattggtaaattgacaaaagcagtagaaaaccgagaacc---aaatta 39421257  T
Q  132 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 187  Q
    |||||||||||||||| ||| ||||||||||| ||| | || ||||||||||||||    
T  39421258 ttttcagtattttcttccatattagctttcaaatcaagagcgagcttcaatgcttc 39421313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 186
Target Start/End: Complemental strand, 39223893 - 39223764
Alignment:
Q  57 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 156  Q
    |||||||||||||||||  ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||||| ||||||||||| |||||||||||      
T  39223893 acttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgtttt 39223794  T
Q  157 ctttcaactcacgcgctagcttcaatgctt 186  Q
    |||| || |||   ||||||||||||||||    
T  39223793 cttttaaatcatatgctagcttcaatgctt 39223764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 39188738 - 39188857
Alignment:
Q  41 tccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagta 140  Q
    ||||||||||||||  || ||||||||||  ||| ||| |  ||| |||||||| || | ||  | |||||| || |||||| ||||||||||| || ||    
T  39188738 tccaaaaagctttaaaacatcatcttcattgaaagaaggaaccaaaccataaattgatagaaggagtagaaaaccaagaaccaccaaagaatttccatta 39188837  T
Q  141 ttttctttcatgttagcttt 160  Q
    ||||||||||||||||||||    
T  39188838 ttttctttcatgttagcttt 39188857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 7e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 44730298 - 44730162
Alignment:
Q  56 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 155  Q
    |||||||||| ||||||| |||||| |||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  44730298 gacttcatctccatcaaagtaagtaagcaatctataaatcgtcaaaatcaatagaaatccgagaacctcctaagaattttcagtattttcttttatgtta 44730199  T
Q  156 gctttcaactcacgcgctagcttcaatgcttcatctc 192  Q
    |||||||||||| | ||||||||||| ||||||||||    
T  44730198 gctttcaactcatgtgctagcttcaaagcttcatctc 44730162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 31 - 192
Target Start/End: Original strand, 44949869 - 44950030
Alignment:
Q  31 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 130  Q
    ||||||||||| || |||||||   ||| ||||||  |||||| |||||| |||||||||||||||  | |||||||||||||| |||||||||||||||    
T  44949869 cagcaacagatgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaaga 44949968  T
Q  131 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 192  Q
    ||||| |||||||||||| || |||  |||||||||| | ||||||||||| ||||||||||    
T  44949969 atttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctc 44950030  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 34 - 192
Target Start/End: Complemental strand, 45343170 - 45343012
Alignment:
Q  34 caacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaatt 133  Q
    |||||||| |||||||||  | ||||||||||| ||||||| ||||| ||||| ||| ||| |||||||||| |||||| || ||||| | ||| || ||    
T  45343170 caacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgattt 45343071  T
Q  134 ttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 192  Q
    |||||||||| |||||| |||||||||||||||| | |||||||| |||||||| ||||    
T  45343070 ttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctc 45343012  T

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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 17060854 - 17060698
Alignment:
Q  31 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 130  Q
    ||||||||||| ||||||| |  | ||||||||||| |||||||||||||  ||||||||||| |||||| ||||| |||||||||||||||||||| ||    
T  17060854 cagcaacagatgcaaaaagatccaagacttcatcttgatcaaaataagtaaacaatccataaaccgacaagatcaacagaaatccgagaacctccaatga 17060755  T
Q  131 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 187  Q
    || |||||||||| |||| |||||||||||||||||| | ||||||||||| |||||    
T  17060754 atattcagtatttgcttttatgttagctttcaactcatgtgctagcttcaaagcttc 17060698  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 32 - 187
Target Start/End: Complemental strand, 33562496 - 33562341
Alignment:
Q  32 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 131  Q
    ||||||| || |||||||||  |  |||||||||||||||||| ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||| ||    
T  33562496 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcatcagaaaaccaagaaccgccaaaaaa 33562397  T
Q  132 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 187  Q
      |||||||||||||||||||||||||||||| |||   |||||||||||||||||    
T  33562396 aattcagtattttctttcatgttagctttcaaatcaaatgctagcttcaatgcttc 33562341  T

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Target: scaffold0283 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 31 - 192
Target Start/End: Original strand, 5849 - 6010
Alignment:
Q  31 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 130  Q
    ||||||||||| || |||||||   ||| ||||||  |||||| |||||| |||||||||||||||  | |||||||||||||| |||||||||||||||    
T  5849 cagcaacagatgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaaga 5948  T
Q  131 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 192  Q
    ||||| |||||||||||| || |||  |||||||||| | ||||||||||| ||||||||||    
T  5949 atttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctc 6010  T

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Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 19809083 - 19808950
Alignment:
Q  56 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 155  Q
    ||||||||||||||||||||||||| ||||| ||||||  ||||||| || |||||| || |||||| ||| ||||||||||||| |   ||||||||||    
T  19809083 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaagcagtagaaaaccaagaaccaccagagaattttcagtact---tttcatgtta 19808987  T
Q  156 gctttcaactcacgcgctagcttcaatgcttcatctc 192  Q
    |||||||| ||| | ||||||||||||| ||| ||||    
T  19808986 gctttcaaatcaagtgctagcttcaatgtttcttctc 19808950  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 16114477 - 16114420
Alignment:
Q  129 gaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgctt 186  Q
    ||||||| |||||| ||| |||||| ||||||||| || |||||||||||||||||||    
T  16114477 gaatttttagtattctctctcatgtaagctttcaaatcgcgcgctagcttcaatgctt 16114420  T

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